Difference between revisions of "PWY-5665"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBITOLUTIL-PWY RIBITOLUTIL-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=T...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBITOLUTIL-PWY RIBITOLUTIL-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** ribitol degradation
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** beta-glucosidase-like_chloroplastic
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** ORF
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** beta_glucosidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[D-RIBULOKIN-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 2-hydroxy-2-methylpropanenitrile[c]
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*** [[annotation-in-silico_annotation]]
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* [[RIBITOL-2-DEHYDROGENASE-RXN]]
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== Genes associated with this reaction  ==
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** 4 associated gene(s):
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_10870]]
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* Gene: [[Tiso_gene_3467]]
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*** [[Tiso_gene_15780]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14162]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5087]]
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** Source: [[annotation-experimental_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5836]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13305]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6187]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10001]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13306]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8669]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15066]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2344]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6188]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6007]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2843]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15067]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6497]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
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* [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
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** '''2''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1224}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ribitol degradation}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: reaction found=2}}
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{{#set: common name=ORF}}
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{{#set: total reaction=2}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: completion rate=100.0}}
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{{#set: common name=beta_glucosidase}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_3467|Tiso_gene_5836|Tiso_gene_13305|Tiso_gene_6187|Tiso_gene_10001|Tiso_gene_13306|Tiso_gene_8669|Tiso_gene_15066|Tiso_gene_2344|Tiso_gene_6188|Tiso_gene_6007|Tiso_gene_2843|Tiso_gene_15067|Tiso_gene_6497}}
 +
{{#set: in pathway=PWY-3121|PWY-7091}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:55, 21 March 2018

Reaction RXN-5341

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-glucosidase-like_chloroplastic
    • ORF
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3121, linamarin degradation: PWY-3121
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7091, linustatin bioactivation: PWY-7091
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5665&oldid=31215"