Difference between revisions of "Tiso gene 13030"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.14-RXN 3.2.1.14-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glycoside_hydrolase_f...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.14-RXN 3.2.1.14-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** glycoside_hydrolase_family_18_protein
+
** formaldehyde assimilation I (serine pathway)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.2.1.14 EC-3.2.1.14]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''5''' reactions found over '''13''' reactions in the full pathway
−
** 1 [[WATER]][c] '''+''' 1 [[CHITIN]][c] '''=>''' 2 [[Chitodextrins]][c]
+
* [[2PGADEHYDRAT-RXN]]
−
* With common name(s):
+
** 4 associated gene(s):
−
** 1 H2O[c] '''+''' 1 chitin[c] '''=>''' 2 a chitodextrin[c]
+
*** [[Tiso_gene_8720]]
−
 
+
*** [[Tiso_gene_14718]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_5619]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_13317]]
−
* [[Tiso_gene_10265]]
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** 7 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** [[orthology-esiliculosus]]
−
== Pathways  ==
+
*** [[annotation-in-silico_annotation]]
−
* [[PWY-7822]], chitin degradation III (Serratia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7822 PWY-7822]
+
*** [[orthology-athaliana]]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
+
*** [[manual-primary_network]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-6855]], chitin degradation I (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6855 PWY-6855]
+
* [[GLYOHMETRANS-RXN]]
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** 4 associated gene(s):
−
== Reconstruction information  ==
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*** [[Tiso_gene_16153]]
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* Category: [[annotation]]
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*** [[Tiso_gene_7776]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_18652]]
−
*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_16154]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[MALATE-DEH-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_2323]]
 +
*** [[Tiso_gene_1990]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RXN-15513]]
 +
** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_9923]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-2881]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPYRUVATE-REDUCTASE-RXN HYDROXYPYRUVATE-REDUCTASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P07254 P07254]
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{{#set: common name=formaldehyde assimilation I (serine pathway)}}
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** [http://www.uniprot.org/uniprot/P23951 P23951]
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/P17541 P17541]
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{{#set: total reaction=13}}
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** [http://www.uniprot.org/uniprot/P29030 P29030]
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{{#set: completion rate=38.0}}
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** [http://www.uniprot.org/uniprot/P20533 P20533]
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** [http://www.uniprot.org/uniprot/P29029 P29029]
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** [http://www.uniprot.org/uniprot/P27050 P27050]
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** [http://www.uniprot.org/uniprot/P11218 P11218]
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** [http://www.uniprot.org/uniprot/P29115 P29115]
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−
** [http://www.uniprot.org/uniprot/Q54501 Q54501]
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** [http://www.uniprot.org/uniprot/P19172 P19172]
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** [http://www.uniprot.org/uniprot/P29026 P29026]
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−
** [http://www.uniprot.org/uniprot/Q23737 Q23737]
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** [http://www.uniprot.org/uniprot/P36362 P36362]
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** [http://www.uniprot.org/uniprot/P19171 P19171]
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** [http://www.uniprot.org/uniprot/P29027 P29027]
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−
** [http://www.uniprot.org/uniprot/P29116 P29116]
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−
** [http://www.uniprot.org/uniprot/Q9R5K8 Q9R5K8]
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−
** [http://www.uniprot.org/uniprot/Q7M233 Q7M233]
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** [http://www.uniprot.org/uniprot/Q9R5K7 Q9R5K7]
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** [http://www.uniprot.org/uniprot/Q9CE95 Q9CE95]
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** [http://www.uniprot.org/uniprot/Q59145 Q59145]
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** [http://www.uniprot.org/uniprot/Q9FRV1 Q9FRV1]
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** [http://www.uniprot.org/uniprot/Q56077 Q56077]
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** [http://www.uniprot.org/uniprot/Q40667 Q40667]
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** [http://www.uniprot.org/uniprot/Q40668 Q40668]
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** [http://www.uniprot.org/uniprot/Q9S9F7 Q9S9F7]
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** [http://www.uniprot.org/uniprot/P54196 P54196]
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** [http://www.uniprot.org/uniprot/O49824 O49824]
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** [http://www.uniprot.org/uniprot/O49825 O49825]
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** [http://www.uniprot.org/uniprot/O49826 O49826]
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** [http://www.uniprot.org/uniprot/O49827 O49827]
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** [http://www.uniprot.org/uniprot/Q7GCM7 Q7GCM7]
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** [http://www.uniprot.org/uniprot/O22080 O22080]
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** [http://www.uniprot.org/uniprot/O49830 O49830]
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** [http://www.uniprot.org/uniprot/Q9SXY2 Q9SXY2]
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** [http://www.uniprot.org/uniprot/O60994 O60994]
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** [http://www.uniprot.org/uniprot/Q9RHU3 Q9RHU3]
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** [http://www.uniprot.org/uniprot/Q9SLP4 Q9SLP4]
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** [http://www.uniprot.org/uniprot/Q9RHU5 Q9RHU5]
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** [http://www.uniprot.org/uniprot/Q9RHU4 Q9RHU4]
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−
** [http://www.uniprot.org/uniprot/Q7M1Q9 Q7M1Q9]
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−
** [http://www.uniprot.org/uniprot/Q7M443 Q7M443]
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** [http://www.uniprot.org/uniprot/Q9S7G9 Q9S7G9]
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** [http://www.uniprot.org/uniprot/P11220 P11220]
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−
** [http://www.uniprot.org/uniprot/Q59924 Q59924]
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** [http://www.uniprot.org/uniprot/Q9FRV0 Q9FRV0]
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** [http://www.uniprot.org/uniprot/P36361 P36361]
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−
** [http://www.uniprot.org/uniprot/P32470 P32470]
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** [http://www.uniprot.org/uniprot/Q92223 Q92223]
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** [http://www.uniprot.org/uniprot/Q7M1R1 Q7M1R1]
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−
** [http://www.uniprot.org/uniprot/P14529 P14529]
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−
** [http://www.uniprot.org/uniprot/Q9S8X7 Q9S8X7]
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** [http://www.uniprot.org/uniprot/P11955 P11955]
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** [http://www.uniprot.org/uniprot/P11797 P11797]
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** [http://www.uniprot.org/uniprot/P05315 P05315]
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** [http://www.uniprot.org/uniprot/P08252 P08252]
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** [http://www.uniprot.org/uniprot/P24626 P24626]
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** [http://www.uniprot.org/uniprot/P25765 P25765]
+
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** [http://www.uniprot.org/uniprot/P27054 P27054]
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** [http://www.uniprot.org/uniprot/P17513 P17513]
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** [http://www.uniprot.org/uniprot/P17514 P17514]
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** [http://www.uniprot.org/uniprot/P29021 P29021]
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** [http://www.uniprot.org/uniprot/P24091 P24091]
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** [http://www.uniprot.org/uniprot/P29059 P29059]
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−
** [http://www.uniprot.org/uniprot/P29060 P29060]
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** [http://www.uniprot.org/uniprot/P29061 P29061]
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−
** [http://www.uniprot.org/uniprot/Q06209 Q06209]
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** [http://www.uniprot.org/uniprot/Q43184 Q43184]
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** [http://www.uniprot.org/uniprot/P36908 P36908]
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** [http://www.uniprot.org/uniprot/Q05638 Q05638]
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** [http://www.uniprot.org/uniprot/P29025 P29025]
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** [http://www.uniprot.org/uniprot/P29024 P29024]
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** [http://www.uniprot.org/uniprot/Q05537 Q05537]
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** [http://www.uniprot.org/uniprot/Q05540 Q05540]
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** [http://www.uniprot.org/uniprot/Q05539 Q05539]
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** [http://www.uniprot.org/uniprot/Q05538 Q05538]
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** [http://www.uniprot.org/uniprot/Q41539 Q41539]
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** [http://www.uniprot.org/uniprot/Q43294 Q43294]
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** [http://www.uniprot.org/uniprot/P52405 P52405]
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** [http://www.uniprot.org/uniprot/P42820 P42820]
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** [http://www.uniprot.org/uniprot/Q12735 Q12735]
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** [http://www.uniprot.org/uniprot/Q43764 Q43764]
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** [http://www.uniprot.org/uniprot/Q43765 Q43765]
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−
** [http://www.uniprot.org/uniprot/Q40114 Q40114]
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** [http://www.uniprot.org/uniprot/Q43591 Q43591]
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** [http://www.uniprot.org/uniprot/Q43151 Q43151]
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** [http://www.uniprot.org/uniprot/Q43150 Q43150]
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** [http://www.uniprot.org/uniprot/Q42421 Q42421]
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−
** [http://www.uniprot.org/uniprot/Q54276 Q54276]
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−
** [http://www.uniprot.org/uniprot/Q42995 Q42995]
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** [http://www.uniprot.org/uniprot/P21226 P21226]
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−
** [http://www.uniprot.org/uniprot/Q43683 Q43683]
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** [http://www.uniprot.org/uniprot/Q43684 Q43684]
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** [http://www.uniprot.org/uniprot/Q12631 Q12631]
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** [http://www.uniprot.org/uniprot/P36907 P36907]
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** [http://www.uniprot.org/uniprot/Q09023 Q09023]
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** [http://www.uniprot.org/uniprot/Q12713 Q12713]
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** [http://www.uniprot.org/uniprot/P52403 P52403]
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** [http://www.uniprot.org/uniprot/P52404 P52404]
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** [http://www.uniprot.org/uniprot/P52406 P52406]
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** [http://www.uniprot.org/uniprot/Q43322 Q43322]
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** [http://www.uniprot.org/uniprot/Q42515 Q42515]
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** [http://www.uniprot.org/uniprot/Q59141 Q59141]
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** [http://www.uniprot.org/uniprot/Q59142 Q59142]
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** [http://www.uniprot.org/uniprot/Q59143 Q59143]
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** [http://www.uniprot.org/uniprot/Q59144 Q59144]
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** [http://www.uniprot.org/uniprot/Q42878 Q42878]
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−
** [http://www.uniprot.org/uniprot/P93154 P93154]
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** [http://www.uniprot.org/uniprot/O50076 O50076]
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** [http://www.uniprot.org/uniprot/Q9ZSI6 Q9ZSI6]
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** [http://www.uniprot.org/uniprot/P93518 P93518]
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** [http://www.uniprot.org/uniprot/O24007 O24007]
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** [http://www.uniprot.org/uniprot/Q41794 Q41794]
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** [http://www.uniprot.org/uniprot/Q41795 Q41795]
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** [http://www.uniprot.org/uniprot/Q42970 Q42970]
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** [http://www.uniprot.org/uniprot/O04138 O04138]
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** [http://www.uniprot.org/uniprot/O04272 O04272]
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** [http://www.uniprot.org/uniprot/Q42993 Q42993]
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** [http://www.uniprot.org/uniprot/Q42839 Q42839]
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** [http://www.uniprot.org/uniprot/O48642 O48642]
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** [http://www.uniprot.org/uniprot/Q43852 Q43852]
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** [http://www.uniprot.org/uniprot/O81144 O81144]
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** [http://www.uniprot.org/uniprot/O81145 O81145]
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** [http://www.uniprot.org/uniprot/O65213 O65213]
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** [http://www.uniprot.org/uniprot/Q40838 Q40838]
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** [http://www.uniprot.org/uniprot/P94084 P94084]
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** [http://www.uniprot.org/uniprot/Q43752 Q43752]
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** [http://www.uniprot.org/uniprot/Q39656 Q39656]
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** [http://www.uniprot.org/uniprot/Q39657 Q39657]
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** [http://www.uniprot.org/uniprot/P23472 P23472]
+
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** [http://www.uniprot.org/uniprot/Q39799 Q39799]
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** [http://www.uniprot.org/uniprot/Q39785 Q39785]
+
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** [http://www.uniprot.org/uniprot/O17412 O17412]
+
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** [http://www.uniprot.org/uniprot/O04222 O04222]
+
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** [http://www.uniprot.org/uniprot/Q96408 Q96408]
+
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** [http://www.uniprot.org/uniprot/Q96409 Q96409]
+
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** [http://www.uniprot.org/uniprot/Q96410 Q96410]
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** [http://www.uniprot.org/uniprot/Q96411 Q96411]
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** [http://www.uniprot.org/uniprot/Q84577 Q84577]
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** [http://www.uniprot.org/uniprot/P92013 P92013]
+
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** [http://www.uniprot.org/uniprot/P96156 P96156]
+
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** [http://www.uniprot.org/uniprot/P75020 P75020]
+
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** [http://www.uniprot.org/uniprot/Q9YMQ7 Q9YMQ7]
+
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** [http://www.uniprot.org/uniprot/Q9ZIX4 Q9ZIX4]
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** [http://www.uniprot.org/uniprot/Q11174 Q11174]
+
−
** [http://www.uniprot.org/uniprot/O44079 O44079]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glycoside_hydrolase_family_18_protein}}
+
−
{{#set: ec number=EC-3.2.1.14}}
+
−
{{#set: gene associated=Tiso_gene_10265}}
+
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{{#set: in pathway=PWY-7822|PWY-6902|PWY-6855}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:57, 21 March 2018

Pathway PWY-1622

  • taxonomic range:
  • common name:
    • formaldehyde assimilation I (serine pathway)
  • Synonym(s):

Reaction(s) found

5 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13030&oldid=31488"