Difference between revisions of "PWY-4661"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Gene == Gene Tiso_gene_17451 == * right end position: ** 3077 * transcription direction: ** NEGATIVE * left end position: ** 667 * centisome position: ** 18.06609...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] ==
+
== Gene Tiso_gene_17451 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 3077
−
* common name:
+
* transcription direction:
−
** polyketide_synthase
+
** NEGATIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** 667
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
* centisome position:
 +
** 18.06609   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ACETYL-COA-ACETYLTRANSFER-RXN]]
−
** 1 [[R-3-hydroxystearoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c]
+
** Source: [[orthology-synechocystis]]
−
* With common name(s):
+
** Source: [[orthology-esiliculosus]]
−
** 1 a (3R)-3-hydroxystearoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c]
+
* Reaction: [[KETOACYLCOATHIOL-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_500]]
+
*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
+
* Reaction: [[METHYLACETOACETYLCOATHIOL-RXN]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_135]]
+
* Reaction: [[RXN-10699]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: ec-number
−
* [[Tiso_gene_136]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
* Reaction: [[RXN-10700]]
−
* [[Tiso_gene_13394]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_6884]]
+
*** Assignment: ec-number
−
** EXPERIMENTAL_ANNOTATION
+
* Reaction: [[RXN-10701]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_10876]]
+
*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: ec-number
−
== Pathways  ==
+
* Reaction: [[RXN-11246]]
−
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
+
** Source: [[annotation-in-silico_annotation]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
*** Assignment: ec-number
−
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
+
** Source: [[annotation-experimental_annotation]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
*** Assignment: ec-number
−
== Reconstruction information  ==
+
* Reaction: [[RXN-12561]]
−
* Category: [[manual]]
+
** Source: [[orthology-esiliculosus]]
−
** Source: [[manual-primary_network]]
+
* Reaction: [[RXN-12565]]
−
* Category: [[annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12710]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-13617]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14268]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14274]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14277]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14774]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14788]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14793]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14799]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14803]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16137]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17116]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17778]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17782]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17787]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17791]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17795]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17799]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[P162-PWY]]
 +
* [[PWY-5177]]
 +
* [[PWY-6583]]
 +
* [[P163-PWY]]
 +
* [[PWY-6883]]
 +
* [[PWY-5676]]
 +
* [[PWY-5136]]
 +
* [[PWY-7778]]
 +
* [[PWY-7779]]
 +
* [[PWY-6588]]
 +
* [[PWY-7288]]
 +
* [[PWY-6174]]
 +
* [[PWY-7340]]
 +
* [[PWY-7337]]
 +
* [[PWY-7094]]
 +
* [[PWY-7654]]
 +
* [[PWY66-391]]
 +
* [[PWY-5789]]
 +
* [[FAO-PWY]]
 +
* [[PWY-6876]]
 +
* [[CENTFERM-PWY]]
 +
* [[PWY-6945]]
 +
* [[PWY-7391]]
 +
* [[PWY-5741]]
 +
* [[PWY-5109]]
 +
* [[PWY1-3]]
 +
* [[ACETOACETATE-DEG-PWY]]
 +
* [[PWY-6948]]
 +
* [[PWY-7726]]
 +
* [[PWY66-367]]
 +
* [[PWY-6435]]
 +
* [[ILEUDEG-PWY]]
 +
* [[PWY-7216]]
 +
* [[PWY-922]]
 +
* [[PWY-7606]]
 +
* [[PWY-7338]]
 +
* [[PWY66-368]]
 +
* [[PWY-7339]]
 +
* [[PWY-6946]]
 +
* [[PWY-735]]
 +
* [[PWY-7401]]
 +
* [[PWY-6863]]
 +
* [[PWY-7524]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=3077}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: left end position=667}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: centisome position=18.06609    }}
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_135|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_10876}}
+
{{#set: reaction associated=ACETYL-COA-ACETYLTRANSFER-RXN|KETOACYLCOATHIOL-RXN|METHYLACETOACETYLCOATHIOL-RXN|RXN-10699|RXN-10700|RXN-10701|RXN-11246|RXN-12561|RXN-12565|RXN-12710|RXN-13617|RXN-14268|RXN-14274|RXN-14277|RXN-14394|RXN-14774|RXN-14788|RXN-14793|RXN-14799|RXN-14803|RXN-16137|RXN-17116|RXN-17778|RXN-17782|RXN-17787|RXN-17791|RXN-17795|RXN-17799}}
−
{{#set: in pathway=PWY-5989|PWY3O-355}}
+
{{#set: pathway associated=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-5136|PWY-7778|PWY-7779|PWY-6588|PWY-7288|PWY-6174|PWY-7340|PWY-7337|PWY-7094|PWY-7654|PWY66-391|PWY-5789|FAO-PWY|PWY-6876|CENTFERM-PWY|PWY-6945|PWY-7391|PWY-5741|PWY-5109|PWY1-3|ACETOACETATE-DEG-PWY|PWY-6948|PWY-7726|PWY66-367|PWY-6435|ILEUDEG-PWY|PWY-7216|PWY-922|PWY-7606|PWY-7338|PWY66-368|PWY-7339|PWY-6946|PWY-735|PWY-7401|PWY-6863|PWY-7524}}
−
{{#set: reconstruction category=manual|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 14:58, 21 March 2018

Gene Tiso_gene_17451

  • right end position:
    • 3077
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 667
  • centisome position:
    • 18.06609
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-4661&oldid=31508"