Difference between revisions of "RXN-113"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
(Created page with "Category:Gene == Gene Tiso_gene_9582 == * right end position: ** 3949 * transcription direction: ** POSITIVE * left end position: ** 1923 * centisome position: ** 20.85909...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
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== Gene Tiso_gene_9582 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3949
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* common name:
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* transcription direction:
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** carbamoyl_phosphate_synthetase
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** POSITIVE
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** protein_pyr1-3
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* left end position:
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* ec number:
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** 1923
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** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
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* centisome position:
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** 20.859095   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.7.11.24-RXN]]
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** 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''=>''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[Pi]][c]
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* With common name(s):
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** 2 ATP[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''=>''' 1 carbamoyl phosphate[c] '''+''' 2 H+[c] '''+''' 2 ADP[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_4685]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4975]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4976]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[PROTEIN-KINASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-8443]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-5381]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3949}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
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{{#set: left end position=1923}}
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* LIGAND-RXN:
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{{#set: centisome position=20.859095    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
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{{#set: reaction associated=2.7.11.24-RXN|PROTEIN-KINASE-RXN|RXN-8443}}
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* UNIPROT:
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{{#set: pathway associated=PWY-5381}}
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** [http://www.uniprot.org/uniprot/O15829 O15829]
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** [http://www.uniprot.org/uniprot/O15830 O15830]
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** [http://www.uniprot.org/uniprot/P07756 P07756]
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** [http://www.uniprot.org/uniprot/P31327 P31327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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{{#set: common name=protein_pyr1-3}}
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{{#set: ec number=EC-6.3.4.16}}
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{{#set: gene associated=Tiso_gene_4685|Tiso_gene_4975|Tiso_gene_4976}}
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{{#set: in pathway=PWY-4984}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:59, 21 March 2018

Gene Tiso_gene_9582

  • right end position:
    • 3949
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1923
  • centisome position:
    • 20.859095
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-113&oldid=31700"