Difference between revisions of "NARINGENIN-CMPD"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14788 RXN-14788] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14788 RXN-14788] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5_-nucleotidase
+
** thiolase
−
** 5_deoxy_cytosolic_type_c_protein
+
** acetyl-_c-acetyltransferase
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
** 3-ketoacyl-_thiolase
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-15676]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-15677]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 AMP[c] '''+''' 1 H2O[c] '''=>''' 1 adenosine[c] '''+''' 1 phosphate[c]
+
** 1 coenzyme A[c] '''+''' 1 6-trans-3-oxo-tridecenoyl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 4-trans-undecenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6640]]
+
* Gene: [[Tiso_gene_3855]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_6988]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_15327]]
−
* [[Tiso_gene_14434]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_3856]]
−
* [[Tiso_gene_5911]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_10116]]
−
* [[Tiso_gene_13929]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14435]]
+
* Gene: [[Tiso_gene_17451]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14246]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
+
* [[PWY-7338]], 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7338 PWY-7338]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29375 29375]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06196 P06196]
 
−
** [http://www.uniprot.org/uniprot/P21588 P21588]
 
−
** [http://www.uniprot.org/uniprot/O34313 O34313]
 
−
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
 
−
** [http://www.uniprot.org/uniprot/O29385 O29385]
 
−
** [http://www.uniprot.org/uniprot/P44569 P44569]
 
−
** [http://www.uniprot.org/uniprot/O83142 O83142]
 
−
** [http://www.uniprot.org/uniprot/P49902 P49902]
 
−
** [http://www.uniprot.org/uniprot/P22848 P22848]
 
−
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
 
−
** [http://www.uniprot.org/uniprot/P21589 P21589]
 
−
** [http://www.uniprot.org/uniprot/P29240 P29240]
 
−
** [http://www.uniprot.org/uniprot/P07024 P07024]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5_-nucleotidase}}
+
{{#set: common name=thiolase}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
{{#set: common name=acetyl-_c-acetyltransferase}}
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
{{#set: common name=3-ketoacyl-_thiolase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.3.1.16}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: gene associated=Tiso_gene_3855|Tiso_gene_15327|Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_17451}}
−
{{#set: gene associated=Tiso_gene_6640|Tiso_gene_6988|Tiso_gene_14434|Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_14435|Tiso_gene_14246}}
+
{{#set: in pathway=PWY-7338}}
−
{{#set: in pathway=SALVADEHYPOX-PWY}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 14:59, 21 March 2018

Reaction RXN-14788

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thiolase
    • acetyl-_c-acetyltransferase
    • 3-ketoacyl-_thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 6-trans-3-oxo-tridecenoyl-CoA[c] => 1 acetyl-CoA[c] + 1 4-trans-undecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7338, 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast): PWY-7338
    • 3 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=NARINGENIN-CMPD&oldid=31709"