Difference between revisions of "PWY-7797"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OROTIDINE-5-PHOSPHATE OROTIDINE-5-PHOSPHATE] == * smiles: ** C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OROTIDINE-5-PHOSPHATE OROTIDINE-5-PHOSPHATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C(C(=O)[O-])=CC(=O)NC(=O)2))
 
* common name:
 
* common name:
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** peptidylarginine_deiminase_(modular_protein)
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** orotidine 5'-phosphate
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/3.5.3.15 EC-3.5.3.15]
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** InChIKey=KYOBSHFOBAOFBF-XVFCMESISA-K
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* molecular weight:
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** 365.17   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[orPDC]]
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** 1 [[WATER]][c] '''+''' 1 [[Protein-L-Arginines]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PROTEIN-L-CITRULLINE]][c]
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* [[OROTPDECARB-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 H2O[c] '''+''' 1 a [protein]-L-arginine[c] '''=>''' 1 ammonium[c] '''+''' 1 a [protein]-L-citrulline[c]
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== Reaction(s) of unknown directionality ==
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* [[OROPRIBTRANS-RXN]]
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== Genes associated with this reaction  ==
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* [[orPRT]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_19262]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16344]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-4921]], protein citrullination: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4921 PWY-4921]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* CAS : 2149-82-8
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** [http://www.genome.jp/dbget-bin/www_bget?R02621 R02621]
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* BIGG : orot5p
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/Q08642 Q08642]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46878393 46878393]
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** [http://www.uniprot.org/uniprot/P20717 P20717]
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* HMDB : HMDB00218
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** [http://www.uniprot.org/uniprot/P70708 P70708]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01103 C01103]
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{{#set: common name=peptidylarginine_deiminase_(modular_protein)}}
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* CHEBI:
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{{#set: ec number=EC-3.5.3.15}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57538 57538]
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{{#set: gene associated=Tiso_gene_19262|Tiso_gene_16344}}
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* METABOLIGHTS : MTBLC57538
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{{#set: in pathway=PWY-4921}}
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{{#set: smiles=C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C(C(=O)[O-])=CC(=O)NC(=O)2))}}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=orotidine 5'-phosphate}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: inchi key=InChIKey=KYOBSHFOBAOFBF-XVFCMESISA-K}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: molecular weight=365.17    }}
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{{#set: consumed by=orPDC|OROTPDECARB-RXN}}
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{{#set: reversible reaction associated=OROPRIBTRANS-RXN|orPRT}}

Revision as of 15:03, 21 March 2018

Metabolite OROTIDINE-5-PHOSPHATE

  • smiles:
    • C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C(C(=O)[O-])=CC(=O)NC(=O)2))
  • common name:
    • orotidine 5'-phosphate
  • inchi key:
    • InChIKey=KYOBSHFOBAOFBF-XVFCMESISA-K
  • molecular weight:
    • 365.17
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 2149-82-8
  • BIGG : orot5p
  • PUBCHEM:
  • HMDB : HMDB00218
  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC57538
"C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C(C(=O)[O-])=CC(=O)NC(=O)2))" cannot be used as a page name in this wiki.



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