Difference between revisions of "OXALATE-DECARBOXYLASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6002 RXN-6002] == * direction: ** LEFT-TO-RIGHT * common name: ** aldehyde_dehydrogenase * ec n...")
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6002 RXN-6002] ==
* taxonomic range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
** superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
+
** aldehyde_dehydrogenase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.2.1.5 EC-1.2.1.5]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''12''' reactions found over '''17''' reactions in the full pathway
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* With identifiers:
* [[CDPREDUCT-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[CPD-16618]][c] '''=>''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[MAL]][c]
** 4 associated gene(s):
+
* With common name(s):
*** [[Tiso_gene_10617]]
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** 1 H2O[c] '''+''' 1 NAD(P)+[c] '''+''' 1 L-malic semialdehyde[c] '''=>''' 1 NAD(P)H[c] '''+''' 2 H+[c] '''+''' 1 (S)-malate[c]
*** [[Tiso_gene_9916]]
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*** [[Tiso_gene_9915]]
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== Genes associated with this reaction  ==
*** [[Tiso_gene_10138]]
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Genes have been associated with this reaction based on different elements listed below.
** 6 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_7322]]
*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
*** [[orthology-athaliana]]
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== Pathways  ==
*** [[orthology-synechocystis]]
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* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
*** [[manual-primary_network]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
* [[DCDPKIN-RXN]]
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== Reconstruction information  ==
** 6 associated gene(s):
+
* Category: [[orthology]]
*** [[Tiso_gene_9290]]
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** Source: [[orthology-esiliculosus]]
*** [[Tiso_gene_18224]]
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*** Tool: [[pantograph]]
*** [[Tiso_gene_17272]]
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* Category: [[annotation]]
*** [[Tiso_gene_16529]]
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** Source: [[annotation-in-silico_annotation]]
*** [[Tiso_gene_17271]]
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*** Tool: [[pathwaytools]]
*** [[Tiso_gene_195]]
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** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[DTDPKIN-RXN]]
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** 6 associated gene(s):
+
*** [[Tiso_gene_18224]]
+
*** [[Tiso_gene_16529]]
+
*** [[Tiso_gene_195]]
+
*** [[Tiso_gene_17271]]
+
*** [[Tiso_gene_17272]]
+
*** [[Tiso_gene_9290]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[DTMPKI-RXN]]
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** 1 associated gene(s):
+
*** [[Tiso_gene_3755]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[DUDPKIN-RXN]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_17272]]
+
*** [[Tiso_gene_17271]]
+
*** [[Tiso_gene_9290]]
+
*** [[Tiso_gene_16529]]
+
*** [[Tiso_gene_18224]]
+
*** [[Tiso_gene_195]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[DUTP-PYROP-RXN]]
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** 2 associated gene(s):
+
*** [[Tiso_gene_18793]]
+
*** [[Tiso_gene_18792]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-athaliana]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
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* [[PWY-7184]]
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** 0 associated gene:
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* [[PWY-7187]]
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** 0 associated gene:
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* [[RIBONUCLEOSIDE-DIP-REDUCTII-RXN]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_9915]]
+
*** [[Tiso_gene_10138]]
+
*** [[Tiso_gene_9916]]
+
*** [[Tiso_gene_10617]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
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* [[RXN0-722]]
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** 4 associated gene(s):
+
*** [[Tiso_gene_10617]]
+
*** [[Tiso_gene_10138]]
+
*** [[Tiso_gene_9915]]
+
*** [[Tiso_gene_9916]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
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* [[THYMIDYLATESYN-RXN]]
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** 2 associated gene(s):
+
*** [[Tiso_gene_18478]]
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*** [[Tiso_gene_7708]]
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** 2 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
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* [[UDPREDUCT-RXN]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_9915]]
+
*** [[Tiso_gene_10617]]
+
*** [[Tiso_gene_10138]]
+
*** [[Tiso_gene_9916]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
== Reaction(s) not found ==
+
* [http://metacyc.org/META/NEW-IMAGE?object=DCTP-DEAM-RXN DCTP-DEAM-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-723 RXN0-723]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-724 RXN0-724]
+
 
== External links  ==
 
== External links  ==
* ECOCYC:
+
{{#set: direction=LEFT-TO-RIGHT}}
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
{{#set: common name=aldehyde_dehydrogenase}}
{{#set: taxonomic range=TAX-2157}}
+
{{#set: ec number=EC-1.2.1.5}}
{{#set: taxonomic range=TAX-2}}
+
{{#set: gene associated=Tiso_gene_7322}}
{{#set: common name=superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)}}
+
{{#set: in pathway=PWY-3641}}
{{#set: reaction found=12}}
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{{#set: reconstruction category=orthology|annotation}}
{{#set: total reaction=17}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
{{#set: completion rate=71.0}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:03, 21 March 2018

Reaction RXN-6002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aldehyde_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3641, L-carnitine degradation III: PWY-3641
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links