Difference between revisions of "RXN-12459"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOHEMEFERROCHELAT-RXN PROTOHEMEFERROCHELAT-RXN] == * direction: ** REVERSIBLE * common name: **...")
(Created page with "Category:Gene == Gene Tiso_gene_18105 == * right end position: ** 2865 * transcription direction: ** POSITIVE * left end position: ** 116 * centisome position: ** 3.570329...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOHEMEFERROCHELAT-RXN PROTOHEMEFERROCHELAT-RXN] ==
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== Gene Tiso_gene_18105 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2865
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* common name:
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* transcription direction:
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** ferrochelatase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.99.1.1 EC-4.99.1.1]
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** 116
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* centisome position:
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** 3.5703294   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.6.3.50-RXN]]
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** 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[FE+2]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[ATPASE-RXN]]
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** 1 ferroheme b[c] '''+''' 2 H+[c] '''<=>''' 1 protoporphyrin IX[c] '''+''' 1 Fe2+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3284]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_15900]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Reaction: [[ATPSYN-RXN]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7219]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2865}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=116}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
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{{#set: centisome position=3.5703294    }}
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* UNIPROT:
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{{#set: reaction associated=3.6.3.50-RXN|ATPASE-RXN|ATPSYN-RXN}}
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** [http://www.uniprot.org/uniprot/P22830 P22830]
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{{#set: pathway associated=PWY-7219}}
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** [http://www.uniprot.org/uniprot/P22315 P22315]
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** [http://www.uniprot.org/uniprot/P28602 P28602]
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** [http://www.uniprot.org/uniprot/Q05338 Q05338]
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** [http://www.uniprot.org/uniprot/P42043 P42043]
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** [http://www.uniprot.org/uniprot/P23871 P23871]
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** [http://www.uniprot.org/uniprot/P32396 P32396]
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** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
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** [http://www.uniprot.org/uniprot/P56107 P56107]
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** [http://www.uniprot.org/uniprot/O67083 O67083]
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** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
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** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
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** [http://www.uniprot.org/uniprot/P22600 P22600]
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** [http://www.uniprot.org/uniprot/P43868 P43868]
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** [http://www.uniprot.org/uniprot/P16622 P16622]
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** [http://www.uniprot.org/uniprot/Q59735 Q59735]
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** [http://www.uniprot.org/uniprot/P43413 P43413]
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** [http://www.uniprot.org/uniprot/P54225 P54225]
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** [http://www.uniprot.org/uniprot/P42045 P42045]
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** [http://www.uniprot.org/uniprot/O64391 O64391]
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** [http://www.uniprot.org/uniprot/P42044 P42044]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ferrochelatase}}
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{{#set: ec number=EC-4.99.1.1}}
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{{#set: gene associated=Tiso_gene_3284|Tiso_gene_15900}}
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{{#set: in pathway=PWY0-1415|HEMESYN2-PWY|HEME-BIOSYNTHESIS-II}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:05, 21 March 2018

Gene Tiso_gene_18105

  • right end position:
    • 2865
  • transcription direction:
    • POSITIVE
  • left end position:
    • 116
  • centisome position:
    • 3.5703294
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12459&oldid=32341"