|
|
| Line 1: |
Line 1: |
| | [[Category:Pathway]] | | [[Category:Pathway]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] == |
| | * taxonomic range: | | * taxonomic range: |
| | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090] | | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090] |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
| |
| | * common name: | | * common name: |
| − | ** palmitate biosynthesis II (bacteria and plants) | + | ** seleno-amino acid biosynthesis |
| | * Synonym(s): | | * Synonym(s): |
| − | ** palmitic acid biosynthesis | + | ** Se-amino acid biosynthesis |
| − | ** de novo lipogenesis | + | ** selenocysteine and selenomethionine biosynthesis |
| | | | |
| | == Reaction(s) found == | | == Reaction(s) found == |
| − | '''31''' reactions found over '''31''' reactions in the full pathway | + | '''4''' reactions found over '''5''' reactions in the full pathway |
| − | * [[3.1.2.21-RXN]] | + | * [[RXN-12726]] |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
| − | * [[4.2.1.58-RXN]]
| + | |
| | ** 6 associated gene(s): | | ** 6 associated gene(s): |
| − | *** [[Tiso_gene_135]] | + | *** [[Tiso_gene_12184]] |
| − | *** [[Tiso_gene_13394]] | + | *** [[Tiso_gene_6110]] |
| − | *** [[Tiso_gene_6884]] | + | *** [[Tiso_gene_7852]] |
| − | *** [[Tiso_gene_136]] | + | *** [[Tiso_gene_819]] |
| − | *** [[Tiso_gene_10876]] | + | *** [[Tiso_gene_17043]] |
| − | *** [[Tiso_gene_500]] | + | *** [[Tiso_gene_2283]] |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | * [[4.2.1.59-RXN]]
| + | |
| − | ** 7 associated gene(s):
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_6884]]
| + | |
| − | *** [[Tiso_gene_6885]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | ** 4 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | * [[4.2.1.61-RXN]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_6884]]
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-16393]]
| + | |
| − | ** 9 associated gene(s):
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_348]]
| + | |
| − | *** [[Tiso_gene_9394]]
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_7855]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_4191]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | * [[RXN-9514]]
| + | |
| − | ** 10 associated gene(s):
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_16579]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_13083]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_9885]]
| + | |
| − | *** [[Tiso_gene_10415]]
| + | |
| − | *** [[Tiso_gene_624]]
| + | |
| | ** 5 reconstruction source(s) associated: | | ** 5 reconstruction source(s) associated: |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[orthology-synechocystis]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9516]]
| |
| − | ** 4 associated gene(s):
| |
| − | *** [[Tiso_gene_19302]]
| |
| − | *** [[Tiso_gene_5939]]
| |
| − | *** [[Tiso_gene_14485]]
| |
| − | *** [[Tiso_gene_15991]]
| |
| − | ** 6 reconstruction source(s) associated:
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| | *** [[annotation-in-silico_annotation]] | | *** [[annotation-in-silico_annotation]] |
| | *** [[orthology-athaliana]] | | *** [[orthology-athaliana]] |
| − | *** [[orthology-synechocystis]] | + | *** [[orthology-creinhardtii]] |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[RXN-9518]]
| + | |
| − | ** 7 associated gene(s):
| + | |
| − | *** [[Tiso_gene_13083]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_9885]]
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | ** 4 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| | *** [[orthology-esiliculosus]] | | *** [[orthology-esiliculosus]] |
| − | * [[RXN-9520]]
| |
| − | ** 6 associated gene(s):
| |
| − | *** [[Tiso_gene_135]]
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_6884]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | ** 3 reconstruction source(s) associated:
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| | *** [[annotation-experimental_annotation]] | | *** [[annotation-experimental_annotation]] |
| − | * [[RXN-9523]] | + | * [[RXN-12728]] |
| − | ** 4 associated gene(s): | + | ** 1 associated gene(s): |
| − | *** [[Tiso_gene_19302]] | + | *** [[Tiso_gene_3732]] |
| − | *** [[Tiso_gene_5939]] | + | ** 1 reconstruction source(s) associated: |
| − | *** [[Tiso_gene_14485]]
| + | *** [[orthology-creinhardtii]] |
| − | *** [[Tiso_gene_15991]]
| + | * [[RXN-12729]] |
| − | ** 6 reconstruction source(s) associated:
| + | ** 1 associated gene(s): |
| − | *** [[annotation-experimental_annotation]]
| + | *** [[Tiso_gene_3732]] |
| − | *** [[orthology-esiliculosus]] | + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[RXN-9524]] | + | |
| − | ** 10 associated gene(s): | + | |
| − | *** [[Tiso_gene_13083]] | + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_9885]]
| + | |
| − | *** [[Tiso_gene_624]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_10415]]
| + | |
| − | *** [[Tiso_gene_16579]]
| + | |
| − | ** 5 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-9527]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_15991]]
| + | |
| − | *** [[Tiso_gene_5939]]
| + | |
| − | *** [[Tiso_gene_19302]]
| + | |
| − | *** [[Tiso_gene_14485]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[RXN-9528]]
| + | |
| − | ** 10 associated gene(s):
| + | |
| − | *** [[Tiso_gene_10415]]
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_13083]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_9885]]
| + | |
| − | *** [[Tiso_gene_624]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_16579]]
| + | |
| − | ** 5 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-9531]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_15991]]
| + | |
| − | *** [[Tiso_gene_19302]]
| + | |
| − | *** [[Tiso_gene_14485]]
| + | |
| − | *** [[Tiso_gene_5939]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[RXN-9532]]
| + | |
| − | ** 7 associated gene(s):
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| − | *** [[Tiso_gene_9885]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_13083]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | ** 4 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-9533]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_135]]
| + | |
| − | *** [[Tiso_gene_136]]
| + | |
| − | *** [[Tiso_gene_13394]]
| + | |
| − | *** [[Tiso_gene_6884]]
| + | |
| − | *** [[Tiso_gene_500]]
| + | |
| − | *** [[Tiso_gene_10876]]
| + | |
| | ** 3 reconstruction source(s) associated: | | ** 3 reconstruction source(s) associated: |
| | *** [[annotation-in-silico_annotation]] | | *** [[annotation-in-silico_annotation]] |
| − | *** [[manual-primary_network]]
| |
| | *** [[annotation-experimental_annotation]] | | *** [[annotation-experimental_annotation]] |
| − | * [[RXN-9535]]
| |
| − | ** 9 associated gene(s):
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | *** [[Tiso_gene_15991]]
| |
| − | *** [[Tiso_gene_14485]]
| |
| − | *** [[Tiso_gene_135]]
| |
| − | *** [[Tiso_gene_19302]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | *** [[Tiso_gene_5939]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | ** 6 reconstruction source(s) associated:
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[orthology-athaliana]]
| |
| − | *** [[orthology-synechocystis]]
| |
| − | *** [[manual-primary_network]]
| |
| − | * [[RXN-9536]]
| |
| − | ** 10 associated gene(s):
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | *** [[Tiso_gene_10415]]
| |
| − | *** [[Tiso_gene_13083]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_624]]
| |
| − | *** [[Tiso_gene_16579]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | *** [[Tiso_gene_9885]]
| |
| − | *** [[Tiso_gene_135]]
| |
| − | ** 5 reconstruction source(s) associated:
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[orthology-synechocystis]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9537]]
| |
| − | ** 9 associated gene(s):
| |
| − | *** [[Tiso_gene_6671]]
| |
| − | *** [[Tiso_gene_135]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_6884]]
| |
| − | *** [[Tiso_gene_6885]]
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | *** [[Tiso_gene_9421]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | ** 5 reconstruction source(s) associated:
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| | *** [[orthology-creinhardtii]] | | *** [[orthology-creinhardtii]] |
| − | *** [[orthology-synechocystis]]
| + | * [[SERINE-O-ACETTRAN-RXN]] |
| − | *** [[annotation-in-silico_annotation]]
| + | ** 3 associated gene(s): |
| − | * [[RXN-9539]]
| + | *** [[Tiso_gene_7066]] |
| − | ** 4 associated gene(s): | + | *** [[Tiso_gene_10634]] |
| − | *** [[Tiso_gene_5939]] | + | *** [[Tiso_gene_4492]] |
| − | *** [[Tiso_gene_14485]]
| + | |
| − | *** [[Tiso_gene_19302]] | + | |
| − | *** [[Tiso_gene_15991]] | + | |
| | ** 6 reconstruction source(s) associated: | | ** 6 reconstruction source(s) associated: |
| − | *** [[annotation-experimental_annotation]]
| |
| | *** [[orthology-esiliculosus]] | | *** [[orthology-esiliculosus]] |
| | *** [[annotation-in-silico_annotation]] | | *** [[annotation-in-silico_annotation]] |
| Line 292: |
Line 48: |
| | *** [[orthology-synechocystis]] | | *** [[orthology-synechocystis]] |
| | *** [[manual-primary_network]] | | *** [[manual-primary_network]] |
| − | * [[RXN-9540]]
| |
| − | ** 7 associated gene(s):
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | *** [[Tiso_gene_135]]
| |
| − | *** [[Tiso_gene_9885]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_13083]]
| |
| − | ** 4 reconstruction source(s) associated:
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9549]]
| |
| − | ** 0 associated gene:
| |
| − | ** 1 reconstruction source(s) associated:
| |
| − | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| |
| − | * [[RXN-9623]]
| |
| − | ** 10 associated gene(s):
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | *** [[Tiso_gene_12275]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | *** [[Tiso_gene_4191]]
| |
| − | *** [[Tiso_gene_9394]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | *** [[Tiso_gene_135]]
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_7855]]
| |
| − | *** [[Tiso_gene_348]]
| |
| − | ** 5 reconstruction source(s) associated:
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[orthology-athaliana]]
| |
| | *** [[orthology-creinhardtii]] | | *** [[orthology-creinhardtii]] |
| − | *** [[orthology-esiliculosus]]
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | * [[RXN-9655]]
| |
| − | ** 6 associated gene(s):
| |
| − | *** [[Tiso_gene_500]]
| |
| − | *** [[Tiso_gene_13394]]
| |
| − | *** [[Tiso_gene_10876]]
| |
| − | *** [[Tiso_gene_136]]
| |
| − | *** [[Tiso_gene_6884]]
| |
| − | *** [[Tiso_gene_135]]
| |
| − | ** 3 reconstruction source(s) associated:
| |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | * [[RXN-9657]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 1 reconstruction source(s) associated:
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9658]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 2 reconstruction source(s) associated:
| |
| − | *** [[orthology-synechocystis]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9659]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 2 reconstruction source(s) associated:
| |
| − | *** [[orthology-synechocystis]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9660]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 1 reconstruction source(s) associated:
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9661]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 1 reconstruction source(s) associated:
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9662]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 1 reconstruction source(s) associated:
| |
| − | *** [[orthology-esiliculosus]]
| |
| − | * [[RXN-9663]]
| |
| − | ** 1 associated gene(s):
| |
| − | *** [[Tiso_gene_10778]]
| |
| − | ** 2 reconstruction source(s) associated:
| |
| − | *** [[manual-primary_network]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| | == Reaction(s) not found == | | == Reaction(s) not found == |
| | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12730 RXN-12730] |
| | == External links == | | == External links == |
| − | * ECOCYC: | + | * PLANTCYC : PWY-6936 |
| − | ** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971] | + | * ARACYC: |
| | + | ** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-6936 PWY-6936] |
| | {{#set: taxonomic range=TAX-33090}} | | {{#set: taxonomic range=TAX-33090}} |
| − | {{#set: taxonomic range=TAX-2}}
| + | {{#set: common name=seleno-amino acid biosynthesis}} |
| − | {{#set: common name=palmitate biosynthesis II (bacteria and plants)}} | + | {{#set: common name=Se-amino acid biosynthesis|selenocysteine and selenomethionine biosynthesis}} |
| − | {{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}} | + | {{#set: reaction found=4}} |
| − | {{#set: reaction found=31}} | + | {{#set: total reaction=5}} |
| − | {{#set: total reaction=31}} | + | {{#set: completion rate=80.0}} |
| − | {{#set: completion rate=100.0}} | + | |
