Difference between revisions of "Tiso gene 12019"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEROXID-RXN PEROXID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ascorbate_peroxidase **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.135-RXN 2.4.1.135-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEROXID-RXN PEROXID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.135-RXN 2.4.1.135-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ascorbate_peroxidase
 
 
** ORF
 
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.11.1.7 EC-1.11.1.7]
+
** [http://enzyme.expasy.org/EC/2.4.1.135 EC-2.4.1.135]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[Phenolic-Donors]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[Phenoxyl-rad-of-phenolic-donors]][c]
+
** 1 [[Gal-Gal-Xyl-Proteins]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GlcA-Gal-Gal-Xyl-Proteins]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 a phenolic donor[c] '''+''' 1 hydrogen peroxide[c] '''=>''' 2 H2O[c] '''+''' 2 a phenoxyl radical of a phenolic donor[c]
+
** 1 a [protein]-3-O-(β-D-galactosyl-(1→3)-β-D-galactosyl-(1→4)-β-D-xylosyl)-L-serine[c] '''+''' 1 UDP-α-D-glucuronate[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 a [protein]-3-O-(β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17551]]
+
* Gene: [[Tiso_gene_4139]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_6431]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5857]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7067]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15820]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16028]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15962]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19683]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9359]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_20206]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11016]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6557]], glycosaminoglycan-protein linkage region biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6557 PWY-6557]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11678 P11678]
 
−
** [http://www.uniprot.org/uniprot/P80025 P80025]
 
−
** [http://www.uniprot.org/uniprot/P22195 P22195]
 
−
** [http://www.uniprot.org/uniprot/P11965 P11965]
 
−
** [http://www.uniprot.org/uniprot/P05164 P05164]
 
−
** [http://www.uniprot.org/uniprot/P22196 P22196]
 
−
** [http://www.uniprot.org/uniprot/P13029 P13029]
 
−
** [http://www.uniprot.org/uniprot/Q42853 Q42853]
 
−
** [http://www.uniprot.org/uniprot/Q26059 Q26059]
 
−
** [http://www.uniprot.org/uniprot/O24081 O24081]
 
−
** [http://www.uniprot.org/uniprot/Q43790 Q43790]
 
−
** [http://www.uniprot.org/uniprot/Q43791 Q43791]
 
−
** [http://www.uniprot.org/uniprot/O24080 O24080]
 
−
** [http://www.uniprot.org/uniprot/P22079 P22079]
 
−
** [http://www.uniprot.org/uniprot/P17179 P17179]
 
−
** [http://www.uniprot.org/uniprot/P17180 P17180]
 
−
** [http://www.uniprot.org/uniprot/Q24926 Q24926]
 
−
** [http://www.uniprot.org/uniprot/Q43854 Q43854]
 
−
** [http://www.uniprot.org/uniprot/P14412 P14412]
 
−
** [http://www.uniprot.org/uniprot/P24101 P24101]
 
−
** [http://www.uniprot.org/uniprot/P24102 P24102]
 
−
** [http://www.uniprot.org/uniprot/P00434 P00434]
 
−
** [http://www.uniprot.org/uniprot/P00433 P00433]
 
−
** [http://www.uniprot.org/uniprot/Q9S913 Q9S913]
 
−
** [http://www.uniprot.org/uniprot/Q9S912 Q9S912]
 
−
** [http://www.uniprot.org/uniprot/Q9S911 Q9S911]
 
−
** [http://www.uniprot.org/uniprot/P15232 P15232]
 
−
** [http://www.uniprot.org/uniprot/P15233 P15233]
 
−
** [http://www.uniprot.org/uniprot/P15003 P15003]
 
−
** [http://www.uniprot.org/uniprot/P15004 P15004]
 
−
** [http://www.uniprot.org/uniprot/P15984 P15984]
 
−
** [http://www.uniprot.org/uniprot/P11247 P11247]
 
−
** [http://www.uniprot.org/uniprot/P12437 P12437]
 
−
** [http://www.uniprot.org/uniprot/P06181 P06181]
 
−
** [http://www.uniprot.org/uniprot/P19135 P19135]
 
−
** [http://www.uniprot.org/uniprot/Q05855 Q05855]
 
−
** [http://www.uniprot.org/uniprot/Q43212 Q43212]
 
−
** [http://www.uniprot.org/uniprot/Q42517 Q42517]
 
−
** [http://www.uniprot.org/uniprot/Q7M1X2 Q7M1X2]
 
−
** [http://www.uniprot.org/uniprot/Q01548 Q01548]
 
−
** [http://www.uniprot.org/uniprot/Q43006 Q43006]
 
−
** [http://www.uniprot.org/uniprot/Q40069 Q40069]
 
−
** [http://www.uniprot.org/uniprot/Q16771 Q16771]
 
−
** [http://www.uniprot.org/uniprot/P16147 P16147]
 
−
** [http://www.uniprot.org/uniprot/Q01603 Q01603]
 
−
** [http://www.uniprot.org/uniprot/Q12575 Q12575]
 
−
** [http://www.uniprot.org/uniprot/Q43774 Q43774]
 
−
** [http://www.uniprot.org/uniprot/Q42854 Q42854]
 
−
** [http://www.uniprot.org/uniprot/Q9SMU8 Q9SMU8]
 
−
** [http://www.uniprot.org/uniprot/Q43158 Q43158]
 
−
** [http://www.uniprot.org/uniprot/Q07446 Q07446]
 
−
** [http://www.uniprot.org/uniprot/Q43032 Q43032]
 
−
** [http://www.uniprot.org/uniprot/Q41577 Q41577]
 
−
** [http://www.uniprot.org/uniprot/Q43218 Q43218]
 
−
** [http://www.uniprot.org/uniprot/Q43219 Q43219]
 
−
** [http://www.uniprot.org/uniprot/Q43220 Q43220]
 
−
** [http://www.uniprot.org/uniprot/Q55110 Q55110]
 
−
** [http://www.uniprot.org/uniprot/Q96518 Q96518]
 
−
** [http://www.uniprot.org/uniprot/O22510 O22510]
 
−
** [http://www.uniprot.org/uniprot/O80912 O80912]
 
−
** [http://www.uniprot.org/uniprot/Q40486 Q40486]
 
−
** [http://www.uniprot.org/uniprot/Q40487 Q40487]
 
−
** [http://www.uniprot.org/uniprot/Q40555 Q40555]
 
−
** [http://www.uniprot.org/uniprot/Q42964 Q42964]
 
−
** [http://www.uniprot.org/uniprot/Q43004 Q43004]
 
−
** [http://www.uniprot.org/uniprot/P37834 P37834]
 
−
** [http://www.uniprot.org/uniprot/P37835 P37835]
 
−
** [http://www.uniprot.org/uniprot/P93675 P93675]
 
−
** [http://www.uniprot.org/uniprot/O24523 O24523]
 
−
** [http://www.uniprot.org/uniprot/O49866 O49866]
 
−
** [http://www.uniprot.org/uniprot/Q43731 Q43731]
 
−
** [http://www.uniprot.org/uniprot/Q9SZE7 Q9SZE7]
 
−
** [http://www.uniprot.org/uniprot/O22443 O22443]
 
−
** [http://www.uniprot.org/uniprot/Q9SZB9 Q9SZB9]
 
−
** [http://www.uniprot.org/uniprot/P27337 P27337]
 
−
** [http://www.uniprot.org/uniprot/Q40068 Q40068]
 
−
** [http://www.uniprot.org/uniprot/O64970 O64970]
 
−
** [http://www.uniprot.org/uniprot/Q42784 Q42784]
 
−
** [http://www.uniprot.org/uniprot/Q43499 Q43499]
 
−
** [http://www.uniprot.org/uniprot/Q07445 Q07445]
 
−
** [http://www.uniprot.org/uniprot/O22602 O22602]
 
−
** [http://www.uniprot.org/uniprot/O65029 O65029]
 
−
** [http://www.uniprot.org/uniprot/P93545 P93545]
 
−
** [http://www.uniprot.org/uniprot/P93546 P93546]
 
−
** [http://www.uniprot.org/uniprot/P93547 P93547]
 
−
** [http://www.uniprot.org/uniprot/P93548 P93548]
 
−
** [http://www.uniprot.org/uniprot/P93549 P93549]
 
−
** [http://www.uniprot.org/uniprot/P93550 P93550]
 
−
** [http://www.uniprot.org/uniprot/P93551 P93551]
 
−
** [http://www.uniprot.org/uniprot/P93552 P93552]
 
−
** [http://www.uniprot.org/uniprot/P93553 P93553]
 
−
** [http://www.uniprot.org/uniprot/O49940 O49940]
 
−
** [http://www.uniprot.org/uniprot/O49941 O49941]
 
−
** [http://www.uniprot.org/uniprot/O49943 O49943]
 
−
** [http://www.uniprot.org/uniprot/O49942 O49942]
 
−
** [http://www.uniprot.org/uniprot/Q40949 Q40949]
 
−
** [http://www.uniprot.org/uniprot/Q40950 Q40950]
 
−
** [http://www.uniprot.org/uniprot/Q40366 Q40366]
 
−
** [http://www.uniprot.org/uniprot/Q40367 Q40367]
 
−
** [http://www.uniprot.org/uniprot/O24336 O24336]
 
−
** [http://www.uniprot.org/uniprot/Q39652 Q39652]
 
−
** [http://www.uniprot.org/uniprot/Q39653 Q39653]
 
−
** [http://www.uniprot.org/uniprot/Q08671 Q08671]
 
−
** [http://www.uniprot.org/uniprot/Q9SUT2 Q9SUT2]
 
−
** [http://www.uniprot.org/uniprot/Q96522 Q96522]
 
−
** [http://www.uniprot.org/uniprot/O81266 O81266]
 
−
** [http://www.uniprot.org/uniprot/Q20616 Q20616]
 
−
** [http://www.uniprot.org/uniprot/Q23490 Q23490]
 
−
** [http://www.uniprot.org/uniprot/O59651 O59651]
 
−
** [http://www.uniprot.org/uniprot/O31066 O31066]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ascorbate_peroxidase}}
 
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.11.1.7}}
+
{{#set: ec number=EC-2.4.1.135}}
−
{{#set: gene associated=Tiso_gene_17551|Tiso_gene_6431|Tiso_gene_5857|Tiso_gene_7067|Tiso_gene_15820|Tiso_gene_16028|Tiso_gene_15962|Tiso_gene_19683|Tiso_gene_9359|Tiso_gene_20206|Tiso_gene_11016}}
+
{{#set: gene associated=Tiso_gene_4139}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY-6557}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:13, 21 March 2018

Reaction 2.4.1.135-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [protein]-3-O-(β-D-galactosyl-(1→3)-β-D-galactosyl-(1→4)-β-D-xylosyl)-L-serine[c] + 1 UDP-α-D-glucuronate[c] => 1 UDP[c] + 1 H+[c] + 1 a [protein]-3-O-(β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6557, glycosaminoglycan-protein linkage region biosynthesis: PWY-6557
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12019&oldid=32966"