Difference between revisions of "3.1.3.67-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_15372 == * left end position: ** 132 * transcription direction: ** NEGATIVE * right end position: ** 4184 * centisome position: ** 2.605606...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribof...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_15372 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] ==
−
* left end position:
+
* direction:
−
** 132
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** riboflavin_biosynthesis_protein
−
* right end position:
+
* ec number:
−
** 4184
+
** [http://enzyme.expasy.org/EC/4.1.99.12 EC-4.1.99.12]
−
* centisome position:
+
−
** 2.605606   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[RXN-15117]]
+
* With identifiers:
−
** [[pantograph]]-[[athaliana]]
+
** 1 [[RIBULOSE-5P]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''+''' 1 [[PROTON]][c]
−
* [[RXN-5464]]
+
* With common name(s):
−
** in-silico_annotation
+
** 1 D-ribulose 5-phosphate[c] '''=>''' 1 formate[c] '''+''' 1 1-deoxy-L-glycero-tetrulose 4-phosphate[c] '''+''' 1 H+[c]
−
***ec-number
+
 
−
== Pathways associated ==
+
== Genes associated with this reaction  ==
−
* [[PWY-7817]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
+
* Gene: [[Tiso_gene_14275]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19932]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=132}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18457 18457]
−
{{#set: right end position=4184}}
+
* LIGAND-RXN:
−
{{#set: centisome position=2.605606    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07281 R07281]
−
{{#set: reaction associated=RXN-15117|RXN-5464}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-7817|MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
+
{{#set: common name=riboflavin_biosynthesis_protein}}
 +
{{#set: ec number=EC-4.1.99.12}}
 +
{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932}}
 +
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:14, 21 March 2018

Reaction DIOHBUTANONEPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3.1.3.67-RXN&oldid=33029"