Difference between revisions of "RXN-2562"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** cis-aconitate...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** cis-aconitate hydratase
+
** methyl ketone biosynthesis (engineered)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''6''' reactions in the full pathway
−
** 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
+
* [[ACYL-COA-OXIDASE-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 cis-aconitate[c] '''+''' 1 H2O[c] '''<=>''' 1 D-threo-isocitrate[c]
+
*** [[Tiso_gene_18566]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_13007]]
+
* [[ENOYL-COA-HYDRAT-RXN]]
−
** EXPERIMENTAL_ANNOTATION
+
** 3 associated gene(s):
−
***EC-NUMBER
+
*** [[Tiso_gene_14262]]
−
== Pathways  ==
+
*** [[Tiso_gene_16145]]
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
+
*** [[Tiso_gene_6885]]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
*** [[orthology-esiliculosus]]
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
* [[OHACYL-COA-DEHYDROG-RXN]]
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
+
** 6 associated gene(s):
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
*** [[Tiso_gene_5857]]
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
+
*** [[Tiso_gene_18838]]
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
*** [[Tiso_gene_18839]]
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
*** [[Tiso_gene_14262]]
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
*** [[Tiso_gene_14026]]
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
+
*** [[Tiso_gene_14027]]
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
** 3 reconstruction source(s) associated:
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
*** [[annotation-in-silico_annotation]]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
*** [[annotation-experimental_annotation]]
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
+
*** [[orthology-esiliculosus]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
== Reaction(s) not found ==
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
+
* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRATE--COA-LIGASE-RXN BUTYRATE--COA-LIGASE-RXN]
−
** '''9''' reactions found over '''16''' reactions in the full pathway
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13247 RXN-13247]
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13248 RXN-13248]
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22144 22144]
+
{{#set: taxonomic range=TAX-2}}
−
* LIGAND-RXN:
+
{{#set: common name=methyl ketone biosynthesis (engineered)}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
+
{{#set: reaction found=3}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: total reaction=6}}
−
{{#set: common name=cis-aconitate hydratase}}
+
{{#set: completion rate=50.0}}
−
{{#set: gene associated=Tiso_gene_13007}}
+
−
{{#set: in pathway=PWY-5913|PWY-6969|PWY-6549|PWY-5392|TCA|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|PWY-5690}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 16:17, 21 March 2018

Pathway PWY-7007

  • taxonomic range:
  • common name:
    • methyl ketone biosynthesis (engineered)
  • Synonym(s):

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-2562&oldid=33348"