Difference between revisions of "Tiso gene 19398"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE-DIOXYGENASE-RXN CYSTEINE-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_6196 == * right end position: ** 10496 * transcription direction: ** NEGATIVE * left end position: ** 7678 * centisome position: ** 61.6657...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE-DIOXYGENASE-RXN CYSTEINE-DIOXYGENASE-RXN] ==
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== Gene Tiso_gene_6196 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 10496
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* common name:
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* transcription direction:
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** cysteine_dioxygenase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.13.11.20 EC-1.13.11.20]
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** 7678
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* centisome position:
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** 61.665733   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[KYNURENINE-3-MONOOXYGENASE-RXN]]
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** 1 [[CYS]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[3-SULFINOALANINE]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 L-cysteine[c] '''+''' 1 oxygen[c] '''=>''' 1 3-sulfinoalanine[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_1457]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-5331]], taurine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5331 PWY-5331]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[CYSTEINE-DEG-PWY]], L-cysteine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE-DEG-PWY CYSTEINE-DEG-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7765]]
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* [[PWY-5651]]
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* [[PWY-6309]]
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* [[PWY-7717]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=10496}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20441 20441]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7678}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00893 R00893]
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{{#set: centisome position=61.665733    }}
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* UNIPROT:
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{{#set: reaction associated=KYNURENINE-3-MONOOXYGENASE-RXN}}
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** [http://www.uniprot.org/uniprot/P21816 P21816]
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{{#set: pathway associated=PWY-7765|PWY-5651|PWY-6309|PWY-7717}}
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** [http://www.uniprot.org/uniprot/Q16878 Q16878]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cysteine_dioxygenase}}
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{{#set: ec number=EC-1.13.11.20}}
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{{#set: gene associated=Tiso_gene_1457}}
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{{#set: in pathway=PWY-5331|CYSTEINE-DEG-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:17, 21 March 2018

Gene Tiso_gene_6196

  • right end position:
    • 10496
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 7678
  • centisome position:
    • 61.665733
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19398&oldid=33359"