Difference between revisions of "Monocarboxylic-Acid-Amides"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14196 RXN-14196] == * direction: ** LEFT-TO-RIGHT * common name: ** protein_pyr1-3 ** carbamoyl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMYLMETHIONINE-DEFORMYLASE-RXN FORMYLMETHIONINE-DEFORMYLASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14196 RXN-14196] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMYLMETHIONINE-DEFORMYLASE-RXN FORMYLMETHIONINE-DEFORMYLASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** protein_pyr1-3
+
** polypeptide_deformylase
−
** carbamoyl_phosphate_synthetase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.2 EC-2.7.2]
+
** [http://enzyme.expasy.org/EC/3.5.1.31 EC-3.5.1.31]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[CARBAMATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[N-FORMYLMETHIONINE]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[MET]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 carbamate[c] '''=>''' 1 ADP[c] '''+''' 1 carbamoyl phosphate[c]
+
** 1 H2O[c] '''+''' 1 N-formyl-L-methionine[c] '''=>''' 1 formate[c] '''+''' 1 L-methionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4685]]
+
* Gene: [[Tiso_gene_14998]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4975]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4976]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7693]], guadinomine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7693 PWY-7693]
 
−
** '''3''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30758 30758]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17781 17781]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01395 R01395]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00653 R00653]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P63916 P63916]
 +
** [http://www.uniprot.org/uniprot/Q9PIT8 Q9PIT8]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=protein_pyr1-3}}
+
{{#set: common name=polypeptide_deformylase}}
−
{{#set: common name=carbamoyl_phosphate_synthetase}}
+
{{#set: ec number=EC-3.5.1.31}}
−
{{#set: ec number=EC-2.7.2}}
+
{{#set: gene associated=Tiso_gene_14998}}
−
{{#set: gene associated=Tiso_gene_4685|Tiso_gene_4975|Tiso_gene_4976}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-7693}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:18, 21 March 2018

Reaction FORMYLMETHIONINE-DEFORMYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polypeptide_deformylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 N-formyl-L-methionine[c] => 1 formate[c] + 1 L-methionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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