Difference between revisions of "Tiso gene 2798"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
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** L-arginine degradation I (arginase pathway)
 
* Synonym(s):
 
* Synonym(s):
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** L-arginase degradative pathway
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** L-glutamate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''3''' reactions in the full pathway
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** 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
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* [[ARGINASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 4-hydroxybenzoate[c] '''+''' 1 all-trans-hexaprenyl diphosphate[c] '''=>''' 1 3-hexaprenyl-4-hydroxybenzoate[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_4415]]
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** 4 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_2848]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
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* [[Tiso_gene_11582]]
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** 1 associated gene(s):
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_11231]]
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* [[Tiso_gene_18201]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_10317]]
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* [[RXN-14116]]
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** [[pantograph]]-[[esiliculosus]]
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** 8 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_6952]]
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* [[PWY3O-19]], ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-19 PWY3O-19]
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*** [[Tiso_gene_3513]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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*** [[Tiso_gene_7381]]
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* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7235 PWY-7235]
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*** [[Tiso_gene_16634]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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*** [[Tiso_gene_18338]]
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== Reconstruction information  ==
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*** [[Tiso_gene_886]]
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* Category: [[orthology]]
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*** [[Tiso_gene_9680]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_18337]]
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*** Tool: [[pantograph]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
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{{#set: taxonomic range=TAX-33208}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: ec number=EC-2.5.1.39}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Tiso_gene_2848|Tiso_gene_11582|Tiso_gene_18201|Tiso_gene_10317}}
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{{#set: common name=L-arginine degradation I (arginase pathway)}}
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{{#set: in pathway=PWY3O-19|PWY-7235}}
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{{#set: common name=L-arginase degradative pathway|L-glutamate biosynthesis}}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction found=3}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: total reaction=3}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: completion rate=100.0}}

Revision as of 16:18, 21 March 2018

Pathway ARGASEDEG-PWY

  • taxonomic range:
  • common name:
    • L-arginine degradation I (arginase pathway)
  • Synonym(s):
    • L-arginase degradative pathway
    • L-glutamate biosynthesis

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2798&oldid=33453"