Difference between revisions of "Tiso gene 600"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoglycolate_phosphatase_2...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** flavin biosynthesis IV (mammalian)
+
** phosphoglycolate_phosphatase_2
 +
** phosphoglycolate_phosphatase
 +
** solute_carrier_family_38
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
 
* Synonym(s):
 
* Synonym(s):
−
** riboflavin (vitamin B2) metabolism
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''2''' reactions found over '''2''' reactions in the full pathway
+
* With identifiers:
−
* [[FADSYN-RXN]]
+
** 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c]
−
** 4 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_5393]]
+
** 1 2-phosphoglycolate[c] '''+''' 1 H2O[c] '''=>''' 1 glycolate[c] '''+''' 1 phosphate[c]
−
*** [[Tiso_gene_5392]]
+
 
−
*** [[Tiso_gene_7479]]
+
== Genes associated with this reaction  ==
−
*** [[Tiso_gene_1086]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 4 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_18052]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-creinhardtii]]
+
*** Assignment: EC-NUMBER
−
*** [[orthology-synechocystis]]
+
* Gene: [[Tiso_gene_18053]]
−
*** [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RIBOFLAVINKIN-RXN]]
+
*** Assignment: EC-NUMBER
−
** 3 associated gene(s):
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_7479]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_1086]]
+
* Gene: [[Tiso_gene_18054]]
−
*** [[Tiso_gene_16837]]
+
** Source: [[orthology-creinhardtii]]
−
** 4 reconstruction source(s) associated:
+
** Source: [[orthology-creinhardtii]]
−
*** [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_15498]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-synechocystis]]
+
*** Assignment: EC-NUMBER
−
*** [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_8723]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* REACTOME : 11070
+
* RHEA:
−
{{#set: taxonomic range=TAX-33208}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
−
{{#set: common name=flavin biosynthesis IV (mammalian)}}
+
* LIGAND-RXN:
−
{{#set: common name=riboflavin (vitamin B2) metabolism}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
−
{{#set: reaction found=2}}
+
* UNIPROT:
−
{{#set: total reaction=2}}
+
** [http://www.uniprot.org/uniprot/P40852 P40852]
−
{{#set: completion rate=100.0}}
+
** [http://www.uniprot.org/uniprot/P40853 P40853]
 +
** [http://www.uniprot.org/uniprot/P32662 P32662]
 +
** [http://www.uniprot.org/uniprot/P73525 P73525]
 +
** [http://www.uniprot.org/uniprot/O33512 O33512]
 +
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=phosphoglycolate_phosphatase_2}}
 +
{{#set: common name=phosphoglycolate_phosphatase}}
 +
{{#set: common name=solute_carrier_family_38}}
 +
{{#set: ec number=EC-3.1.3.18}}
 +
{{#set: gene associated=Tiso_gene_18052|Tiso_gene_18053|Tiso_gene_18054|Tiso_gene_15498|Tiso_gene_8723}}
 +
{{#set: in pathway=PWY-181}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:22, 21 March 2018

Reaction GPH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoglycolate_phosphatase_2
    • phosphoglycolate_phosphatase
    • solute_carrier_family_38
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-phosphoglycolate[c] + 1 H2O[c] => 1 glycolate[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_600&oldid=33773"