Difference between revisions of "Tiso gene 14608"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] == * direction: ** REVERSIBLE * common name: ** bifunctional_asp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16099 RXN-16099] == * direction: ** LEFT-TO-RIGHT * common name: ** delta-8_desaturase * ec num...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16099 RXN-16099] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** bifunctional_aspartokinase_homoserine_dehydrogenase
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** delta-8_desaturase
−
** aspartokinase
+
−
** homoserine_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.2.4 EC-2.7.2.4]
+
** [http://enzyme.expasy.org/EC/1.14.19.4 EC-1.14.19.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[L-BETA-ASPARTYL-P]][c] '''+''' 1 [[ADP]][c]
+
** 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-17351]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''=>''' 1 [[CPD-17283]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-aspartate[c] '''<=>''' 1 L-aspartyl-4-phosphate[c] '''+''' 1 ADP[c]
+
** 2 H+[c] '''+''' 1 oxygen[c] '''+''' 1 a [glycerolipid]-(11Z,14Z)-icosa-11,14-dienoate[c] '''+''' 2 a ferrocytochrome b5[c] '''=>''' 1 a [glycerolipid]-di-homo-&gamma;-linolenate[c] '''+''' 2 H2O[c] '''+''' 2 a ferricytochrome b5[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17057]]
+
* Gene: [[Tiso_gene_5024]]
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13809]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_16097]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4345]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
+
* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7601 PWY-7601]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7153]], grixazone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7153 PWY-7153]
+
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6559]], spermidine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6559 PWY-6559]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
 
** '''7''' reactions found over '''7''' reactions in the full pathway
 
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6562]], norspermidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6562 PWY-6562]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P101-PWY]], ectoine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=P101-PWY P101-PWY]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23776 23776]
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{{#set: common name=delta-8_desaturase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-1.14.19.4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00480 R00480]
+
{{#set: gene associated=Tiso_gene_5024}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-7601}}
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** [http://www.uniprot.org/uniprot/P08495 P08495]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P44505 P44505]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P27725 P27725]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q04795 Q04795]
+
−
** [http://www.uniprot.org/uniprot/Q57991 Q57991]
+
−
** [http://www.uniprot.org/uniprot/P00561 P00561]
+
−
** [http://www.uniprot.org/uniprot/P00562 P00562]
+
−
** [http://www.uniprot.org/uniprot/Q9PHT4 Q9PHT4]
+
−
** [http://www.uniprot.org/uniprot/Q9JTN3 Q9JTN3]
+
−
** [http://www.uniprot.org/uniprot/P53553 P53553]
+
−
** [http://www.uniprot.org/uniprot/P10869 P10869]
+
−
** [http://www.uniprot.org/uniprot/P08660 P08660]
+
−
** [http://www.uniprot.org/uniprot/P26512 P26512]
+
−
** [http://www.uniprot.org/uniprot/P37142 P37142]
+
−
** [http://www.uniprot.org/uniprot/P41403 P41403]
+
−
** [http://www.uniprot.org/uniprot/P0A4Z9 P0A4Z9]
+
−
** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18]
+
−
** [http://www.uniprot.org/uniprot/P49079 P49079]
+
−
** [http://www.uniprot.org/uniprot/P49080 P49080]
+
−
** [http://www.uniprot.org/uniprot/P93402 P93402]
+
−
** [http://www.uniprot.org/uniprot/O81852 O81852]
+
−
** [http://www.uniprot.org/uniprot/O63067 O63067]
+
−
** [http://www.uniprot.org/uniprot/O65027 O65027]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=bifunctional_aspartokinase_homoserine_dehydrogenase}}
+
−
{{#set: common name=aspartokinase}}
+
−
{{#set: common name=homoserine_dehydrogenase}}
+
−
{{#set: ec number=EC-2.7.2.4}}
+
−
{{#set: gene associated=Tiso_gene_17057|Tiso_gene_13809|Tiso_gene_16097|Tiso_gene_4345}}
+
−
{{#set: in pathway=HOMOSERSYN-PWY|PWY-7153|DAPLYSINESYN-PWY|PWY-2942|PWY-2941|PWY-6559|PWY-5097|PWY-6562|P101-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:23, 21 March 2018

Reaction RXN-16099

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • delta-8_desaturase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7601, arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): PWY-7601
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14608&oldid=33928"