Difference between revisions of "PWY0-41"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TA...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1K-87 RXN1K-87] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1K-87 RXN1K-87] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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* common name:
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** L-valine degradation I
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
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* [[1.2.1.25-RXN]]
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** 1 [[CPD-787]][c] '''=>''' 1 [[CPD-786]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_3260]]
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** 1 (2Z,4Z)-2-hydroxyhepta-2,4-dienedioate[c] '''=>''' 1 (4Z)-2-oxohept-4-enedioate[c]
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*** [[Tiso_gene_11793]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_19690]]
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* [[2.6.1.22-RXN]]
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** Source: [[orthology-athaliana]]
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** 0 associated gene:
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-experimental_annotation]]
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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* [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
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*** Tool: [[pantograph]]
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** 6 associated gene(s):
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*** [[Tiso_gene_19590]]
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*** [[Tiso_gene_7107]]
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*** [[Tiso_gene_19771]]
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*** [[Tiso_gene_19772]]
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_19592]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_2224]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18403]]
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*** [[Tiso_gene_14984]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[MEPROPCOA-FAD-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[METHYLACYLYLCOA-HYDROXY-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_14262]]
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*** [[Tiso_gene_14257]]
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_6885]]
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*** [[Tiso_gene_16145]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11213]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11323]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** [http://www.genome.jp/dbget-bin/www_bget?R04134 R04134]
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{{#set: taxonomic range=TAX-2759}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-201174}}
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{{#set: gene associated=Tiso_gene_19690}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: in pathway=}}
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{{#set: taxonomic range=TAX-1239}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=L-valine degradation I}}
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{{#set: reconstruction source=orthology-athaliana}}
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{{#set: reaction found=8}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: total reaction=8}}
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{{#set: completion rate=100.0}}
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Revision as of 15:26, 21 March 2018

Reaction RXN1K-87

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2Z,4Z)-2-hydroxyhepta-2,4-dienedioate[c] => 1 (4Z)-2-oxohept-4-enedioate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY0-41&oldid=34147"