Difference between revisions of "PWY-6140"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
 +
** propionyl-_carboxylase_alpha_chain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
+
** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a nucleoside diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a nucleoside 5'-monophosphate[c] '''+''' 1 phosphate[c]
+
** 1 3-methylcrotonyl-CoA[c] '''+''' 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 H+[c] '''+''' 1 3-methylglutaconyl-CoA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12899]]
+
* Gene: [[Tiso_gene_14499]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_13653]]
+
* Gene: [[Tiso_gene_5029]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_20236]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_10675]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13589 13589]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00329 R00329]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
 +
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial}}
−
{{#set: ec number=EC-3.6.1.6}}
+
{{#set: common name=propionyl-_carboxylase_alpha_chain}}
−
{{#set: gene associated=Tiso_gene_12899|Tiso_gene_13653|Tiso_gene_20236}}
+
{{#set: ec number=EC-6.4.1.4}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_14499|Tiso_gene_5029|Tiso_gene_10675}}
 +
{{#set: in pathway=LEU-DEG2-PWY}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:26, 21 March 2018

Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
    • propionyl-_carboxylase_alpha_chain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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