Difference between revisions of "PWY-5870"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4021 RXN-4021] == * direction: ** LEFT-TO-RIGHT * common name: ** sterol_methyltransferase * ec...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4021 RXN-4021] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** sterol_methyltransferase
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** oleate biosynthesis IV (anaerobic)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.41 EC-2.1.1.41]
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* Synonym(s):
 
* Synonym(s):
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** cis-7-hexadecenoate biosynthesis
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** cis-9-octadecenoate biosynthesis
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** (7Z)-hexadec-7-enoate biosynthesis
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** (9Z)-octadec-9-enoate biosynthesis
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** (7Z)-hexadecenoate biosynthesis
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** (9Z)-octadecenoate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''14''' reactions in the full pathway
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CYCLOARTENOL]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-696]][c]
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* [[RXN-16615]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 cycloartenol[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c] '''+''' 1 24-methylenecycloartanol[c]
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*** [[Tiso_gene_5939]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_11849]]
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* [[RXN-16616]]
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** IN-SILICO_ANNOTATION
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** 2 associated gene(s):
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_9885]]
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* [[Tiso_gene_11850]]
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*** [[Tiso_gene_13083]]
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** IN-SILICO_ANNOTATION
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** 2 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_12590]]
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* [[RXN-16619]]
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** [[pantograph]]-[[creinhardtii]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_6884]]
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* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
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** 1 reconstruction source(s) associated:
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** '''10''' reactions found over '''36''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155]
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* [[RXN-16621]]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_5939]]
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* Category: [[orthology]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-creinhardtii]]
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* [[RXN-16622]]
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*** Tool: [[pantograph]]
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** 2 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_9885]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_13083]]
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*** Tool: [[pathwaytools]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-16623]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6884]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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* [[RXN-16625]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5939]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-16626]]
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** 2 associated gene(s):
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_13083]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-16627]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6884]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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* [[RXN-9533]]
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** 6 associated gene(s):
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_6884]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16614 RXN-16614]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16620 RXN-16620]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16624 RXN-16624]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16628 RXN-16628]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07481 R07481]
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{{#set: common name=oleate biosynthesis IV (anaerobic)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cis-7-hexadecenoate biosynthesis|cis-9-octadecenoate biosynthesis|(7Z)-hexadec-7-enoate biosynthesis|(9Z)-octadec-9-enoate biosynthesis|(7Z)-hexadecenoate biosynthesis|(9Z)-octadecenoate biosynthesis}}
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{{#set: common name=sterol_methyltransferase}}
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{{#set: reaction found=10}}
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{{#set: ec number=EC-2.1.1.41}}
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{{#set: total reaction=14}}
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{{#set: gene associated=Tiso_gene_11849|Tiso_gene_11850|Tiso_gene_12590}}
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{{#set: completion rate=71.0}}
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{{#set: in pathway=PWY-2541|PWY-7155}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:26, 21 March 2018

Pathway PWY-7664

  • taxonomic range:
  • common name:
    • oleate biosynthesis IV (anaerobic)
  • Synonym(s):
    • cis-7-hexadecenoate biosynthesis
    • cis-9-octadecenoate biosynthesis
    • (7Z)-hexadec-7-enoate biosynthesis
    • (9Z)-octadec-9-enoate biosynthesis
    • (7Z)-hexadecenoate biosynthesis
    • (9Z)-octadecenoate biosynthesis

Reaction(s) found

10 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5870&oldid=34194"