Difference between revisions of "PWYQT-4450"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.165-RXN 2.3.1.165-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4930 TAX-49...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.165-RXN 2.3.1.165-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4930 TAX-4930]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** polyketide_synthase
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** ethylene biosynthesis V (engineered)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.165 EC-2.3.1.165]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''10''' reactions in the full pathway
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** 3 [[MALONYL-COA]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 3 [[PROTON]][c] '''=>''' 1 [[WATER]][c] '''+''' 3 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADP]][c] '''+''' 4 [[CO-A]][c] '''+''' 1 [[CPD-637]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 3 malonyl-CoA[c] '''+''' 1 NADPH[c] '''+''' 1 acetyl-CoA[c] '''+''' 3 H+[c] '''=>''' 1 H2O[c] '''+''' 3 CO2[c] '''+''' 1 NADP+[c] '''+''' 4 coenzyme A[c] '''+''' 1 6-methylsalicylate[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_500]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_136]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_13394]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***EC-NUMBER
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* [[3PGAREARR-RXN]]
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* [[Tiso_gene_135]]
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** 16 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_15048]]
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***EC-NUMBER
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*** [[Tiso_gene_7201]]
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* [[Tiso_gene_10876]]
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*** [[Tiso_gene_9922]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_2841]]
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***EC-NUMBER
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*** [[Tiso_gene_14530]]
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== Pathways  ==
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*** [[Tiso_gene_16754]]
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* [[PWY-7490]], patulin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7490 PWY-7490]
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*** [[Tiso_gene_2365]]
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** '''1''' reactions found over '''15''' reactions in the full pathway
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*** [[Tiso_gene_16271]]
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== Reconstruction information  ==
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*** [[Tiso_gene_5468]]
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* Category: [[annotation]]
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*** [[Tiso_gene_20311]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14664]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ACONITATEDEHYDR-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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* [[ACONITATEHYDR-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13007]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[CITSYN-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOTOALL-PWY]]
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** 0 associated gene:
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12538 RXN-12538]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4930}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12240 12240]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=ethylene biosynthesis V (engineered)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07253 R07253]
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{{#set: reaction found=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=10}}
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{{#set: common name=polyketide_synthase}}
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{{#set: completion rate=70.0}}
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{{#set: ec number=EC-2.3.1.165}}
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{{#set: gene associated=Tiso_gene_500|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_10876}}
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{{#set: in pathway=PWY-7490}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:27, 21 March 2018

Pathway PWY-7124

  • taxonomic range:
  • common name:
    • ethylene biosynthesis V (engineered)
  • Synonym(s):

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWYQT-4450&oldid=34267"