Difference between revisions of "Tiso gene 14226"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_dipho...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ORF
 +
** nucleoside_diphosphate_kinase
 +
** adenylate_kinase_domain-containing_protein_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.98.1 EC-1.3.98.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[FUM]][c] '''+''' 1 [[DI-H-OROTATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[OROTATE]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[DCDP]][c] '''=>''' 1 [[DCTP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 fumarate[c] '''+''' 1 (S)-dihydroorotate[c] '''=>''' 1 succinate[c] '''+''' 1 orotate[c]
+
** 1 ATP[c] '''+''' 1 dCDP[c] '''=>''' 1 dCTP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5280]]
+
* Gene: [[Tiso_gene_9290]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17271]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17272]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18224]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16529]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30062 30062]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01867 R01867]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P74782 P74782]
+
−
** [http://www.uniprot.org/uniprot/Q63707 Q63707]
+
−
** [http://www.uniprot.org/uniprot/Q48240 Q48240]
+
−
** [http://www.uniprot.org/uniprot/P32746 P32746]
+
−
** [http://www.uniprot.org/uniprot/Q02127 Q02127]
+
−
** [http://www.uniprot.org/uniprot/P32748 P32748]
+
−
** [http://www.uniprot.org/uniprot/P28294 P28294]
+
−
** [http://www.uniprot.org/uniprot/P28272 P28272]
+
−
** [http://www.uniprot.org/uniprot/P46539 P46539]
+
−
** [http://www.uniprot.org/uniprot/Q9CFC9 Q9CFC9]
+
−
** [http://www.uniprot.org/uniprot/P25996 P25996]
+
−
** [http://www.uniprot.org/uniprot/Q58070 Q58070]
+
−
** [http://www.uniprot.org/uniprot/P0A7E1 P0A7E1]
+
−
** [http://www.uniprot.org/uniprot/Q9JX66 Q9JX66]
+
−
** [http://www.uniprot.org/uniprot/Q9PPB6 Q9PPB6]
+
−
** [http://www.uniprot.org/uniprot/Q9CFW8 Q9CFW8]
+
−
** [http://www.uniprot.org/uniprot/P45477 P45477]
+
−
** [http://www.uniprot.org/uniprot/P32747 P32747]
+
−
** [http://www.uniprot.org/uniprot/P07670 P07670]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.3.98.1}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_5280}}
+
{{#set: common name=nucleoside_diphosphate_kinase}}
−
{{#set: in pathway=PWY-7790}}
+
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: reconstruction source=orthology-synechocystis}}
+
{{#set: gene associated=Tiso_gene_9290|Tiso_gene_17271|Tiso_gene_17272|Tiso_gene_195|Tiso_gene_18224|Tiso_gene_16529}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7197|PWY0-166|PWY-6545}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:29, 21 March 2018

Reaction DCDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • nucleoside_diphosphate_kinase
    • adenylate_kinase_domain-containing_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dCDP[c] => 1 dCTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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