Difference between revisions of "CPD-7526"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase *...")
(Created page with "Category:Gene == Gene Tiso_gene_20000 == * right end position: ** 1742 * transcription direction: ** POSITIVE * left end position: ** 60 * centisome position: ** 3.2258062...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] ==
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== Gene Tiso_gene_20000 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1742
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 60
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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** 3.2258062   
 
* Synonym(s):
 
* Synonym(s):
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** D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 
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** β-hydroxypalmitoyl-acyl carrier protein dehydrase
 
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** β-hydroxypalmitoyl thioester dehydratase
 
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** β-hydroxypalmityl-ACP dehydrase
 
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** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
 
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** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.13-RXN]]
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** 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[2-Hexadecenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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* With common name(s):
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** 1 a (3R)-3-hydroxypalmitoyl-[acp][c] '''=>''' 1 a trans hexadecenoyl-[acp][c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6884]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[GAPDHSYNEC-RXN]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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* Reaction: [[GAPOXNPHOSPHN-RXN]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[TRIOSEPISOMERIZATION-RXN]]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-1042]]
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* [[P341-PWY]]
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* [[PWY66-399]]
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* [[PWY66-373]]
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* [[GLUCONEO-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[SUCSYN-PWY]]
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* [[P124-PWY]]
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* [[PWY-6142]]
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* [[CALVIN-PWY]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5484]]
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* [[P185-PWY]]
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* [[P122-PWY]]
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* [[PWY-7003]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=1742}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=60}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: centisome position=3.2258062    }}
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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{{#set: reaction associated=1.2.1.13-RXN|GAPDHSYNEC-RXN|GAPOXNPHOSPHN-RXN|TRIOSEPISOMERIZATION-RXN}}
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|SUCSYN-PWY|P124-PWY|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|P185-PWY|P122-PWY|PWY-7003}}
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: common name=D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|β-hydroxypalmitoyl-acyl carrier protein dehydrase|β-hydroxypalmitoyl thioester dehydratase|β-hydroxypalmityl-ACP dehydrase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)}}
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{{#set: gene associated=Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_135}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:29, 21 March 2018

Gene Tiso_gene_20000

  • right end position:
    • 1742
  • transcription direction:
    • POSITIVE
  • left end position:
    • 60
  • centisome position:
    • 3.2258062
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-7526&oldid=34478"