Difference between revisions of "CPD-10277"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-711 RXN-711] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1.3....")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-711 RXN-711] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** polyketide_synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.3.1 EC-1.3.1]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** β-hydroxyacyl-ACP dehydrase
 
−
** HDDase
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** FabA
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
−
** β-hydroxydecanoate dehydrase
 
−
** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[NADPH]][c] '''+''' 1 [[CPD-698]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-709]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 a (2E)-dec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
+
** 1 NADPH[c] '''+''' 1 campest-4-en-3-one[c] '''+''' 1 H+[c] '''=>''' 1 (5α)-campestan-3-one[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_14327]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
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***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6884]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-699]], brassinosteroid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-699 PWY-699]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''11''' reactions found over '''25''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWY-2582]], brassinosteroid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2582 PWY-2582]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''7''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-primary_network]]
+
** Source: [[orthology-athaliana]]
−
* Category: [[annotation]]
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07429 R07429]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: ec number=EC-1.3.1}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: gene associated=Tiso_gene_14327}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: in pathway=PWY-699|PWY-2582}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
+
{{#set: reconstruction source=orthology-athaliana}}
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_6884|Tiso_gene_135}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
+
−
{{#set: reconstruction category=manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 16:29, 21 March 2018

Reaction RXN-711

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADPH[c] + 1 campest-4-en-3-one[c] + 1 H+[c] => 1 (5α)-campestan-3-one[c] + 1 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-699, brassinosteroid biosynthesis I: PWY-699
    • 11 reactions found over 25 reactions in the full pathway
  • PWY-2582, brassinosteroid biosynthesis II: PWY-2582
    • 7 reactions found over 21 reactions in the full pathway

Reconstruction information

External links




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