Difference between revisions of "RXN-12399"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** pyruvate_kinase * ec n...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MPBQ MPBQ] == * smiles: ** CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C * common name: *...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MPBQ MPBQ] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C
 
* common name:
 
* common name:
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** pyruvate_kinase
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** 2-methyl-6-phytyl-1,4-benzoquinol
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40]
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** InChIKey=GTWCNYRFOZKWTL-UOFXASEASA-N
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* molecular weight:
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** 402.659   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-2542]]
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** 1 [[PYRUVATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-2541]]
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** 1 pyruvate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 phosphoenolpyruvate[c] '''+''' 1 H+[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14504]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18206]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_974]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14505]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
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** [http://www.genome.jp/dbget-bin/www_bget?C15882 C15882]
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* LIGAND-RXN:
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* HMDB : HMDB38959
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** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=75920 75920]
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** [http://www.uniprot.org/uniprot/Q7M034 Q7M034]
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* METABOLIGHTS : MTBLC75920
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** [http://www.uniprot.org/uniprot/P11979 P11979]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P11980 P11980]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=71768135 71768135]
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** [http://www.uniprot.org/uniprot/Q07637 Q07637]
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{{#set: smiles=CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C}}
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** [http://www.uniprot.org/uniprot/P34038 P34038]
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{{#set: common name=2-methyl-6-phytyl-1,4-benzoquinol}}
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** [http://www.uniprot.org/uniprot/P43924 P43924]
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{{#set: inchi key=InChIKey=GTWCNYRFOZKWTL-UOFXASEASA-N}}
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** [http://www.uniprot.org/uniprot/Q57572 Q57572]
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{{#set: molecular weight=402.659    }}
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** [http://www.uniprot.org/uniprot/P0AD61 P0AD61]
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{{#set: consumed by=RXN-2542}}
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** [http://www.uniprot.org/uniprot/P19680 P19680]
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{{#set: produced by=RXN-2541}}
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** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0]
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** [http://www.uniprot.org/uniprot/P80885 P80885]
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** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6]
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** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8]
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** [http://www.uniprot.org/uniprot/P47458 P47458]
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** [http://www.uniprot.org/uniprot/Q46078 Q46078]
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** [http://www.uniprot.org/uniprot/P30614 P30614]
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** [http://www.uniprot.org/uniprot/P22200 P22200]
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** [http://www.uniprot.org/uniprot/Q27788 Q27788]
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** [http://www.uniprot.org/uniprot/P51182 P51182]
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** [http://www.uniprot.org/uniprot/P51181 P51181]
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** [http://www.uniprot.org/uniprot/P31865 P31865]
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** [http://www.uniprot.org/uniprot/P00549 P00549]
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** [http://www.uniprot.org/uniprot/P00548 P00548]
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** [http://www.uniprot.org/uniprot/P30613 P30613]
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** [http://www.uniprot.org/uniprot/O75758 O75758]
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** [http://www.uniprot.org/uniprot/P12928 P12928]
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** [http://www.uniprot.org/uniprot/O30853 O30853]
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** [http://www.uniprot.org/uniprot/P30615 P30615]
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** [http://www.uniprot.org/uniprot/P30616 P30616]
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** [http://www.uniprot.org/uniprot/Q02499 Q02499]
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** [http://www.uniprot.org/uniprot/P22360 P22360]
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** [http://www.uniprot.org/uniprot/P21599 P21599]
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** [http://www.uniprot.org/uniprot/P14618 P14618]
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** [http://www.uniprot.org/uniprot/Q42954 Q42954]
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** [http://www.uniprot.org/uniprot/Q40545 Q40545]
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** [http://www.uniprot.org/uniprot/P52480 P52480]
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** [http://www.uniprot.org/uniprot/P52489 P52489]
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** [http://www.uniprot.org/uniprot/P78031 P78031]
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** [http://www.uniprot.org/uniprot/Q55863 Q55863]
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** [http://www.uniprot.org/uniprot/P73534 P73534]
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** [http://www.uniprot.org/uniprot/O65595 O65595]
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** [http://www.uniprot.org/uniprot/Q42806 Q42806]
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** [http://www.uniprot.org/uniprot/Q43117 Q43117]
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** [http://www.uniprot.org/uniprot/Q10208 Q10208]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=pyruvate_kinase}}
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{{#set: ec number=EC-2.7.1.40}}
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{{#set: gene associated=Tiso_gene_14504|Tiso_gene_18206|Tiso_gene_974|Tiso_gene_14505}}
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{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLYCOLYSIS|NPGLUCAT-PWY|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6901|PWY-7383|P124-PWY|PWY-6886|PWY-5723|FERMENTATION-PWY|PWY-6142|P122-PWY|PWY-5484|PWY-7003}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:34, 21 March 2018

Metabolite MPBQ

  • smiles:
    • CC(CCCC(CCCC(C)CCCC(C)=CCC1(C=C(O)C=C(C)C(O)=1))C)C
  • common name:
    • 2-methyl-6-phytyl-1,4-benzoquinol
  • inchi key:
    • InChIKey=GTWCNYRFOZKWTL-UOFXASEASA-N
  • molecular weight:
    • 402.659
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIGAND-CPD:
  • HMDB : HMDB38959
  • CHEBI:
  • METABOLIGHTS : MTBLC75920
  • PUBCHEM:




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