Difference between revisions of "COBALAMINSYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058] == * direction: ** LEFT-TO-RIGHT * common name: ** 2,5-diamino-6-(5-phosphorib...")
(Created page with "Category:Gene == Gene Tiso_gene_17809 == * right end position: ** 5555 * transcription direction: ** POSITIVE * left end position: ** 3019 * centisome position: ** 51.0656...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058] ==
+
== Gene Tiso_gene_17809 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 5555
−
* common name:
+
* transcription direction:
−
** 2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase
+
** POSITIVE
−
** drap_deaminase
+
* left end position:
−
* ec number:
+
** 3019
−
** [http://enzyme.expasy.org/EC/3.5.4 EC-3.5.4]
+
* centisome position:
 +
** 51.065628   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ASPAMINOTRANS-RXN]]
−
** 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CPD-10809]][c] '''=>''' 1 [[CPD-1086]][c] '''+''' 1 [[AMMONIUM]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one[c] '''=>''' 1 5-amino-6-(5-phospho-D-ribitylamino)uracil[c] '''+''' 1 ammonium[c]
+
* Reaction: [[PHEAMINOTRANS-RXN]]
−
 
+
** Source: [[orthology-athaliana]]
−
== Genes associated with this reaction  ==
+
* Reaction: [[RXN-10814]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_17798]]
+
*** Assignment: automated-name-match
−
** IN-SILICO_ANNOTATION
+
* Reaction: [[RXN-11737]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
== Pathways  ==
+
*** Assignment: automated-name-match
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
+
* Reaction: [[RXN-13697]]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-5913]]
 +
* [[PHESYN]]
 +
* [[PWY-6318]]
 +
* [[PWY-7383]]
 +
* [[ASPARTATE-DEG1-PWY]]
 +
* [[PWY-6643]]
 +
* [[PWY-6642]]
 +
* [[PWY-6638]]
 +
* [[ASPARTATESYN-PWY]]
 +
* [[PWY-7432]]
 +
* [[PWY-7117]]
 +
* [[GLUTDEG-PWY]]
 +
* [[PWY-7115]]
 +
* [[ANAPHENOXI-PWY]]
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 +
* [[PWY-5079]]
 +
* [[ASPARAGINE-DEG1-PWY-1]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=5555}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R09377 R09377]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=3019}}
−
{{#set: common name=2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase}}
+
{{#set: centisome position=51.065628    }}
−
{{#set: common name=drap_deaminase}}
+
{{#set: reaction associated=ASPAMINOTRANS-RXN|PHEAMINOTRANS-RXN|RXN-10814|RXN-11737|RXN-13697}}
−
{{#set: ec number=EC-3.5.4}}
+
{{#set: pathway associated=PWY-5913|PHESYN|PWY-6318|PWY-7383|ASPARTATE-DEG1-PWY|PWY-6643|PWY-6642|PWY-6638|ASPARTATESYN-PWY|PWY-7432|PWY-7117|GLUTDEG-PWY|PWY-7115|ANAPHENOXI-PWY|MALATE-ASPARTATE-SHUTTLE-PWY|PWY-5079|ASPARAGINE-DEG1-PWY-1}}
−
{{#set: gene associated=Tiso_gene_17798}}
+
−
{{#set: in pathway=PWY-6167|PWY-6168}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 16:36, 21 March 2018

Gene Tiso_gene_17809

  • right end position:
    • 5555
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3019
  • centisome position:
    • 51.065628
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=COBALAMINSYN-RXN&oldid=35162"