Difference between revisions of "COBALAMINSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058] == * direction: ** LEFT-TO-RIGHT * common name: ** 2,5-diamino-6-(5-phosphorib...")
(Created page with "Category:Gene == Gene Tiso_gene_17809 == * right end position: ** 5555 * transcription direction: ** POSITIVE * left end position: ** 3019 * centisome position: ** 51.0656...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058] ==
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== Gene Tiso_gene_17809 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5555
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* common name:
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* transcription direction:
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** 2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase
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** POSITIVE
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** drap_deaminase
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* left end position:
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* ec number:
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** 3019
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** [http://enzyme.expasy.org/EC/3.5.4 EC-3.5.4]
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* centisome position:
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** 51.065628   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPAMINOTRANS-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CPD-10809]][c] '''=>''' 1 [[CPD-1086]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one[c] '''=>''' 1 5-amino-6-(5-phospho-D-ribitylamino)uracil[c] '''+''' 1 ammonium[c]
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* Reaction: [[PHEAMINOTRANS-RXN]]
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** Source: [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-10814]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_17798]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-11737]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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* Reaction: [[RXN-13697]]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-5913]]
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* [[PHESYN]]
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* [[PWY-6318]]
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* [[PWY-7383]]
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* [[ASPARTATE-DEG1-PWY]]
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* [[PWY-6643]]
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* [[PWY-6642]]
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* [[PWY-6638]]
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* [[ASPARTATESYN-PWY]]
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* [[PWY-7432]]
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* [[PWY-7117]]
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* [[GLUTDEG-PWY]]
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* [[PWY-7115]]
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* [[ANAPHENOXI-PWY]]
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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* [[PWY-5079]]
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* [[ASPARAGINE-DEG1-PWY-1]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=5555}}
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** [http://www.genome.jp/dbget-bin/www_bget?R09377 R09377]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=3019}}
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{{#set: common name=2,5-diamino-6-(5-phosphoribitylamino)pyrimidin-4(3H)-one deaminase}}
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{{#set: centisome position=51.065628    }}
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{{#set: common name=drap_deaminase}}
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{{#set: reaction associated=ASPAMINOTRANS-RXN|PHEAMINOTRANS-RXN|RXN-10814|RXN-11737|RXN-13697}}
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{{#set: ec number=EC-3.5.4}}
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{{#set: pathway associated=PWY-5913|PHESYN|PWY-6318|PWY-7383|ASPARTATE-DEG1-PWY|PWY-6643|PWY-6642|PWY-6638|ASPARTATESYN-PWY|PWY-7432|PWY-7117|GLUTDEG-PWY|PWY-7115|ANAPHENOXI-PWY|MALATE-ASPARTATE-SHUTTLE-PWY|PWY-5079|ASPARAGINE-DEG1-PWY-1}}
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{{#set: gene associated=Tiso_gene_17798}}
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{{#set: in pathway=PWY-6167|PWY-6168}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:36, 21 March 2018

Gene Tiso_gene_17809

  • right end position:
    • 5555
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3019
  • centisome position:
    • 51.065628
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=COBALAMINSYN-RXN&oldid=35162"