Difference between revisions of "Tiso gene 13099"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.2.1.34-RXN 6.2.1.34-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.2.1.34-RXN 6.2.1.34-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1 EC-3.6.1]
+
** [http://enzyme.expasy.org/EC/6.2.1.34 EC-6.2.1.34]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[DIHYDRONEOPTERIN-P]][c] '''=>''' 1 [[DIHYDRO-NEO-PTERIN]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[FERULIC-ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[FERULOYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 7,8-dihydroneopterin 3'-phosphate[c] '''=>''' 1 7,8-dihydroneopterin[c] '''+''' 1 phosphate[c]
+
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 ferulate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 feruloyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15988]]
+
* Gene: [[Tiso_gene_12275]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_10760]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_14183]]
−
* [[Tiso_gene_2019]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2747]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_10288]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5713]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1142]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18343]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13784]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17467]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_8601]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19075]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4645]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8599]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6767]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_12514]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2924]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3667]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1799]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10158]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_4112]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6144]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_16176]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_43]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13729]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_15582]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_277]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3314]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16712]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6277]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8600]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13604]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17804]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_12636]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13847]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14428]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_11387]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_7067]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
+
* [[PWY-6343]], ferulate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6343 PWY-6343]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
+
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''9''' reactions found over '''19''' reactions in the full pathway
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25306 25306]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04621 R04621]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02194 R02194]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.6.1}}
+
{{#set: ec number=EC-6.2.1.34}}
−
{{#set: gene associated=Tiso_gene_15988|Tiso_gene_10760|Tiso_gene_2019|Tiso_gene_2747|Tiso_gene_10288|Tiso_gene_5713|Tiso_gene_1142|Tiso_gene_18343|Tiso_gene_13784|Tiso_gene_17467|Tiso_gene_8601|Tiso_gene_19075|Tiso_gene_4645|Tiso_gene_8599|Tiso_gene_6767|Tiso_gene_12514|Tiso_gene_2924|Tiso_gene_3667|Tiso_gene_1799|Tiso_gene_10158|Tiso_gene_4112|Tiso_gene_6144|Tiso_gene_16176|Tiso_gene_43|Tiso_gene_13729|Tiso_gene_15582|Tiso_gene_277|Tiso_gene_3314|Tiso_gene_16712|Tiso_gene_6277|Tiso_gene_8600|Tiso_gene_13604|Tiso_gene_17804|Tiso_gene_12636|Tiso_gene_13847|Tiso_gene_14428|Tiso_gene_11387|Tiso_gene_7067}}
+
{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
−
{{#set: in pathway=PWY-7539|PWY-6797|PWY-6147}}
+
{{#set: in pathway=PWY-6343|PWY-1121}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Revision as of 16:37, 21 March 2018

Reaction 6.2.1.34-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 ferulate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 feruloyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6343, ferulate degradation: PWY-6343
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13099&oldid=35194"