Difference between revisions of "CPD1G-1344"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5463 RXN-5463] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALPMUT-RXN GALPMUT-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** udp-galactopyranose...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5463 RXN-5463] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALPMUT-RXN GALPMUT-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** ORF
 +
** udp-galactopyranose_mutase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.257 EC-2.4.1.257]
+
** [http://enzyme.expasy.org/EC/5.4.99.9 EC-5.4.99.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-5161]][c] '''+''' 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[CPD-5162]][c] '''+''' 1 [[GDP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CPD-14553]][c] '''<=>''' 1 [[UDP-D-GALACTO-14-FURANOSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 &alpha;-D-Man-(1&rarr;3)-&beta;-D-Man-(1&rarr;4)-&beta;-D-GlcNAc-(1&rarr;4)-&alpha;-D-GlcNAc-diphosphodolichol[c] '''+''' 1 GDP-&alpha;-D-mannose[c] '''=>''' 1 &alpha;-D-Man-(1&rarr;3)-[&alpha;-D-Man-(1&rarr;6)]-&alpha;-D-Man-(1&rarr;4)-&beta;-D-GlcNAc-(1&rarr;4)-&alpha;-D-GlcNAc-diphosphodolichol[c] '''+''' 1 GDP[c] '''+''' 1 H+[c]
+
** 1 UDP-&alpha;-D-galactose[c] '''<=>''' 1 UDP-&alpha;-D-galactofuranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_15395]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3775]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
+
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
−
** '''19''' reactions found over '''19''' reactions in the full pathway
+
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[OANTIGEN-PWY]], O-antigen building blocks biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=OANTIGEN-PWY OANTIGEN-PWY]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7622]], UDP-galactofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7622 PWY-7622]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29522 29522]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24132 24132]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06238 R06238]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00505 R00505]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: ec number=EC-2.4.1.257}}
+
** [http://www.uniprot.org/uniprot/Q9PML8 Q9PML8]
−
{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=udp-galactopyranose_mutase}}
 +
{{#set: ec number=EC-5.4.99.9}}
 +
{{#set: gene associated=Tiso_gene_15395|Tiso_gene_3775}}
 +
{{#set: in pathway=PWY-6397|OANTIGEN-PWY|PWY-7328|PWY-7622}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:39, 21 March 2018

Reaction GALPMUT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • udp-galactopyranose_mutase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: PWY-6397
    • 2 reactions found over 17 reactions in the full pathway
  • OANTIGEN-PWY, O-antigen building blocks biosynthesis (E. coli): OANTIGEN-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: PWY-7328
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7622, UDP-galactofuranose biosynthesis: PWY-7622
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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