Difference between revisions of "RXN-12626"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-TOCOPHEROL ALPHA-TOCOPHEROL] == * smiles: ** CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=C(C...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-TOCOPHEROL ALPHA-TOCOPHEROL] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=C(C)C(=C(O1)2)C)C))
 
* common name:
 
* common name:
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** 2-isopropylmalate_synthase_chloroplastic
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** α-tocopherol
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.3.3.13 EC-2.3.3.13]
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** InChIKey=GVJHHUAWPYXKBD-IEOSBIPESA-N
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* molecular weight:
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** 430.713   
 
* Synonym(s):
 
* Synonym(s):
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** (2R,4'R,8'R)-α-tocopherol
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** (R,R,R)-α-tocopherol
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** 5,7,8-trimethyltocol
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ACETYL-COA]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[CO-A]][c]
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* [[TOCOPHEROL-O-METHYLTRANSFERASE-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 acetyl-CoA[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 (2S)-2-isopropylmalate[c] '''+''' 1 coenzyme A[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_11453]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIPID_MAPS : LMPR02020001
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=14985 14985]
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** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
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* CAS : 2074-53-5
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* UNIPROT:
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* DRUGBANK : DB00163
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** [http://www.uniprot.org/uniprot/P06208 P06208]
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* NCI:
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** [http://www.uniprot.org/uniprot/Q58595 Q58595]
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** [http://cactus.nci.nih.gov/ncidb2.2/?nsc=82623 82623]
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** [http://www.uniprot.org/uniprot/P09151 P09151]
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* HMDB : HMDB01893
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** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
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** [http://www.genome.jp/dbget-bin/www_bget?C02477 C02477]
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** [http://www.uniprot.org/uniprot/Q58787 Q58787]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P94565 P94565]
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** [http://www.chemspider.com/Chemical-Structure.14265.html 14265]
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** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q02141 Q02141]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=18145 18145]
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** [http://www.uniprot.org/uniprot/P48575 P48575]
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* METABOLIGHTS : MTBLC18145
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** [http://www.uniprot.org/uniprot/O86511 O86511]
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{{#set: smiles=CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=C(C)C(=C(O1)2)C)C))}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=α-tocopherol}}
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{{#set: common name=2-isopropylmalate_synthase_chloroplastic}}
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{{#set: inchi key=InChIKey=GVJHHUAWPYXKBD-IEOSBIPESA-N}}
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{{#set: ec number=EC-2.3.3.13}}
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{{#set: molecular weight=430.713    }}
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{{#set: gene associated=Tiso_gene_11453}}
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{{#set: common name=(2R,4'R,8'R)-α-tocopherol|(R,R,R)-α-tocopherol|5,7,8-trimethyltocol}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: produced by=TOCOPHEROL-O-METHYLTRANSFERASE-RXN}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:40, 21 March 2018

Metabolite ALPHA-TOCOPHEROL

  • smiles:
    • CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=C(C)C(=C(O1)2)C)C))
  • common name:
    • α-tocopherol
  • inchi key:
    • InChIKey=GVJHHUAWPYXKBD-IEOSBIPESA-N
  • molecular weight:
    • 430.713
  • Synonym(s):
    • (2R,4'R,8'R)-α-tocopherol
    • (R,R,R)-α-tocopherol
    • 5,7,8-trimethyltocol

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIPID_MAPS : LMPR02020001
  • PUBCHEM:
  • CAS : 2074-53-5
  • DRUGBANK : DB00163
  • NCI:
  • HMDB : HMDB01893
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC18145




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