Difference between revisions of "Tiso gene 14774"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydroli...")
(Created page with "Category:Gene == Gene Tiso_gene_12348 == * right end position: ** 3503 * transcription direction: ** POSITIVE * left end position: ** 580 * centisome position: ** 8.147211...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] ==
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== Gene Tiso_gene_12348 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3503
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* common name:
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* transcription direction:
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** dihydrolipoyllysine-residue_succinyltransferase_component_of_2-oxoglutarate_dehydrogenase_mitochondrial
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.2.4.2 EC-1.2.4.2]
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** 580
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* centisome position:
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** 8.147211   
 
* Synonym(s):
 
* Synonym(s):
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** Oxoglutarate decarboxylase
 
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** 2-oxoglutarate decarboxylation
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-15556]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine[c]
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10209]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7511]]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: right end position=3503}}
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** [http://www.uniprot.org/uniprot/P23129 P23129]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.uniprot.org/uniprot/Q02218 Q02218]
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{{#set: left end position=580}}
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** [http://www.uniprot.org/uniprot/Q60597 Q60597]
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{{#set: centisome position=8.147211    }}
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** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P20967 P20967]
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{{#set: pathway associated=PWY-7511}}
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** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
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** [http://www.uniprot.org/uniprot/P20707 P20707]
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** [http://www.uniprot.org/uniprot/P51056 P51056]
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** [http://www.uniprot.org/uniprot/Q56600 Q56600]
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** [http://www.uniprot.org/uniprot/O49541 O49541]
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** [http://www.uniprot.org/uniprot/Q59106 Q59106]
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** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
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** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=dihydrolipoyllysine-residue_succinyltransferase_component_of_2-oxoglutarate_dehydrogenase_mitochondrial}}
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{{#set: ec number=EC-1.2.4.2}}
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{{#set: common name=Oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}}
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{{#set: gene associated=Tiso_gene_10209}}
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{{#set: in pathway=PWY66-398|PWY-5084}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:41, 21 March 2018

Gene Tiso_gene_12348

  • right end position:
    • 3503
  • transcription direction:
    • POSITIVE
  • left end position:
    • 580
  • centisome position:
    • 8.147211
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14774&oldid=35681"