Difference between revisions of "Tiso gene 20057"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** riboflavin_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14065 RXN-14065] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside_hydrolase * ec n...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14065 RXN-14065] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** riboflavin_kinase
+
** nucleoside_hydrolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.26 EC-2.7.1.26]
+
** [http://enzyme.expasy.org/EC/3.2.2.10 EC-3.2.2.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RIBOFLAVIN]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CYTOSINE]][c] '''+''' 1 [[CPD-15317]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 riboflavin[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 FMN[c] '''+''' 1 H+[c]
+
** 1 CMP[c] '''+''' 1 H2O[c] '''=>''' 1 cytosine[c] '''+''' 1 D-ribofuranose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7479]]
+
* Gene: [[Tiso_gene_11910]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_12995]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_1086]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_16837]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
+
* [[PWY-7570]], blasticidin S biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7570 PWY-7570]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
* [[PWY-7569]], arginomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7569 PWY-7569]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
Line 50: Line 34:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14357 14357]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30078 30078]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00510 R00510]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
+
−
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
+
−
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=riboflavin_kinase}}
+
{{#set: common name=nucleoside_hydrolase}}
−
{{#set: ec number=EC-2.7.1.26}}
+
{{#set: ec number=EC-3.2.2.10}}
−
{{#set: gene associated=Tiso_gene_7479|Tiso_gene_1086|Tiso_gene_16837}}
+
{{#set: gene associated=Tiso_gene_11910|Tiso_gene_12995}}
−
{{#set: in pathway=PWY66-366|PWY-6168|RIBOSYN2-PWY|PWY-5523}}
+
{{#set: in pathway=PWY-7570|PWY-7569}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:43, 21 March 2018

Reaction RXN-14065

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 CMP[c] + 1 H2O[c] => 1 cytosine[c] + 1 D-ribofuranose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7570, blasticidin S biosynthesis: PWY-7570
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-7569, arginomycin biosynthesis: PWY-7569
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20057&oldid=35844"