Difference between revisions of "CPD-315"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glycerol-3-phosp...")
(Created page with "Category:Gene == Gene Tiso_gene_5838 == * right end position: ** 3410 * transcription direction: ** POSITIVE * left end position: ** 1939 * centisome position: ** 15.06136...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] ==
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== Gene Tiso_gene_5838 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3410
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** glycerol-3-phosphate_dehydrogenase
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* left end position:
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* ec number:
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** 1939
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** [http://enzyme.expasy.org/EC/1.1.1.8 EC-1.1.1.8]
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* centisome position:
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** 15.061363   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MERCAPYSTRANS-RXN]]
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** 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 glycerone phosphate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] '''=>''' 1 sn-glycerol 3-phosphate[c] '''+''' 1 NAD+[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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* Reaction: [[RXN0-6359]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_2811]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2810]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6069]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_15777]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13013]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_3718]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6118]], glycerol-3-phosphate shuttle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6118 PWY-6118]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7411]], phosphatidate biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7411 PWY-7411]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN0-6385]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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* Reaction: [[THIOSULFATE-SULFURTRANSFERASE-RXN]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-5329]]
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* [[PWY-5350]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3410}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=1939}}
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** [http://www.uniprot.org/uniprot/P13707 P13707]
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{{#set: centisome position=15.061363    }}
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** [http://www.uniprot.org/uniprot/P08507 P08507]
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{{#set: reaction associated=MERCAPYSTRANS-RXN|RXN0-6359|RXN0-6385|THIOSULFATE-SULFURTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/O25614 O25614]
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{{#set: pathway associated=PWY-5329|PWY-5350}}
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** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
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** [http://www.uniprot.org/uniprot/P43798 P43798]
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** [http://www.uniprot.org/uniprot/O29390 O29390]
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** [http://www.uniprot.org/uniprot/P46919 P46919]
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** [http://www.uniprot.org/uniprot/P07735 P07735]
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** [http://www.uniprot.org/uniprot/P13706 P13706]
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** [http://www.uniprot.org/uniprot/Q00055 Q00055]
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** [http://www.uniprot.org/uniprot/P34517 P34517]
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** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
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** [http://www.uniprot.org/uniprot/P21695 P21695]
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** [http://www.uniprot.org/uniprot/P41911 P41911]
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** [http://www.uniprot.org/uniprot/P90593 P90593]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=glycerol-3-phosphate_dehydrogenase}}
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{{#set: ec number=EC-1.1.1.8}}
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{{#set: gene associated=Tiso_gene_2811|Tiso_gene_2810|Tiso_gene_6069|Tiso_gene_15777|Tiso_gene_13013|Tiso_gene_3718}}
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{{#set: in pathway=PWY-6118|PWY-7411|PWY-7385}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:43, 21 March 2018

Gene Tiso_gene_5838

  • right end position:
    • 3410
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1939
  • centisome position:
    • 15.061363
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-315&oldid=35853"