Difference between revisions of "Tiso gene 4156"

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(Created page with "Category:Gene == Gene Tiso_gene_565 == * left end position: ** 4555 * transcription direction: ** POSITIVE * right end position: ** 5955 * centisome position: ** 14.475022...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_565 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] ==
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* left end position:
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* direction:
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** 4555
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ORF
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* right end position:
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** related_to_isoamyl_alcohol_oxidase
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** 5955
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** d-lactate_dehydrogenase
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* centisome position:
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** xylitol_oxidase
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** 14.475022   
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** mitochondrial_l-galactono-_-lactone_dehydrogenase
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** oxidoreductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.98 EC-1.3.1.98]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[UDP-N-ACETYLMURAMATE]][c] '''+''' 1 [[NADP]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 H+[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine-enolpyruvate[c] '''+''' 1 NADPH[c] '''=>''' 1 UDP-N-acetyl-α-D-muramate[c] '''+''' 1 NADP+[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_4659]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12058]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5194]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4661]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_210]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6635]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5195]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2120]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6787]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7079]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14132]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2121]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2119]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8778]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14187]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7380]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12685]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18014]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=4555}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
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{{#set: right end position=5955}}
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* LIGAND-RXN:
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{{#set: centisome position=14.475022    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03192 R03192]
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{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9PM01 Q9PM01]
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** [http://www.uniprot.org/uniprot/Q9JV28 Q9JV28]
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** [http://www.uniprot.org/uniprot/P44605 P44605]
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** [http://www.uniprot.org/uniprot/P08373 P08373]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=related_to_isoamyl_alcohol_oxidase}}
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{{#set: common name=d-lactate_dehydrogenase}}
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{{#set: common name=xylitol_oxidase}}
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{{#set: common name=mitochondrial_l-galactono-_-lactone_dehydrogenase}}
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{{#set: common name=oxidoreductase}}
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{{#set: ec number=EC-1.3.1.98}}
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{{#set: gene associated=Tiso_gene_4659|Tiso_gene_12058|Tiso_gene_5194|Tiso_gene_4661|Tiso_gene_210|Tiso_gene_6635|Tiso_gene_5195|Tiso_gene_2120|Tiso_gene_6787|Tiso_gene_7079|Tiso_gene_14132|Tiso_gene_2121|Tiso_gene_2119|Tiso_gene_8778|Tiso_gene_14187|Tiso_gene_7380|Tiso_gene_12685|Tiso_gene_18014}}
 +
{{#set: in pathway=PWY-6386|PWY-6387}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:44, 21 March 2018

Reaction UDPNACETYLMURAMATEDEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • related_to_isoamyl_alcohol_oxidase
    • d-lactate_dehydrogenase
    • xylitol_oxidase
    • mitochondrial_l-galactono-_-lactone_dehydrogenase
    • oxidoreductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6386, UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): PWY-6386
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): PWY-6387
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4156&oldid=35913"