Difference between revisions of "3.4.21.53-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_16011 == * left end position: ** 272 * transcription direction: ** POSITIVE * right end position: ** 4176 * centisome position: ** 5.850720...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15122 RXN-15122] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** serine_racemase ** t...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_16011 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15122 RXN-15122] ==
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* left end position:
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* direction:
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** 272
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ORF
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* right end position:
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** serine_racemase
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** 4176
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** threonine_mitochondrial
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* centisome position:
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** 5.8507204   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[AIRCARBOXY-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[THR]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15056]][c] '''+''' 1 [[WATER]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 L-threonine[c] '''=>''' 1 H+[c] '''+''' 1 (2Z)-2-aminobut-2-enoate[c] '''+''' 1 H2O[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN0-742]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* Gene: [[Tiso_gene_8525]]
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* [[PWY-6123]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6124]]
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*** Assignment: EC-NUMBER
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* [[PWY-7234]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17207]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12535]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5826]], hypoglycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5826 PWY-5826]
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** '''4''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5437]], L-threonine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5437 PWY-5437]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=272}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=ORF}}
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{{#set: right end position=4176}}
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{{#set: common name=serine_racemase}}
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{{#set: centisome position=5.8507204    }}
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{{#set: common name=threonine_mitochondrial}}
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{{#set: reaction associated=AIRCARBOXY-RXN|RXN0-742}}
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{{#set: gene associated=Tiso_gene_8525|Tiso_gene_17207|Tiso_gene_12535}}
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{{#set: pathway associated=PWY-6123|PWY-6124|PWY-7234}}
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{{#set: in pathway=ILEUSYN-PWY|PWY-5826|PWY-5437}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:44, 21 March 2018

Reaction RXN-15122

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • serine_racemase
    • threonine_mitochondrial
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-threonine[c] => 1 H+[c] + 1 (2Z)-2-aminobut-2-enoate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine): ILEUSYN-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5826, hypoglycin biosynthesis: PWY-5826
    • 4 reactions found over 14 reactions in the full pathway
  • PWY-5437, L-threonine degradation I: PWY-5437
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3.4.21.53-RXN&oldid=35927"