Difference between revisions of "RXN-12200"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETAGALACTOSID-RXN BETAGALACTOSID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** β-ga...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1121 RXN-1121] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETAGALACTOSID-RXN BETAGALACTOSID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1121 RXN-1121] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** β-galactosidase
 
−
** glycoside_hydrolase
 
−
** polyprotein
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/3.2.1.108 EC-3.2.1.108]
 
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-15972]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[GALACTOSE]][c]
+
** 1 [[FERULIC-ACID]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[5-HYDROXY-FERULIC-ACID]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 lactose[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 β-D-galactose[c]
+
** 1 ferulate[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 oxygen[c] '''=>''' 1 H2O[c] '''+''' 1 5-hydroxyferulate[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17558]]
+
* Gene: [[Tiso_gene_17028]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_8263]]
−
* [[Tiso_gene_12839]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_3577]]
−
* [[Tiso_gene_1398]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_11183]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_1547]]
 +
** Source: [[orthology-athaliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[BGALACT-PWY]], lactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=BGALACT-PWY BGALACT-PWY]
+
* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10076 10076]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28659 28659]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01100 R01100]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07440 R07440]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q29522 Q29522]
+
−
** [http://www.uniprot.org/uniprot/Q29521 Q29521]
+
−
** [http://www.uniprot.org/uniprot/Q29519 Q29519]
+
−
** [http://www.uniprot.org/uniprot/Q29518 Q29518]
+
−
** [http://www.uniprot.org/uniprot/P09849 P09849]
+
−
** [http://www.uniprot.org/uniprot/P09848 P09848]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=β-galactosidase}}
+
{{#set: gene associated=Tiso_gene_17028|Tiso_gene_8263|Tiso_gene_3577|Tiso_gene_11183|Tiso_gene_1547}}
−
{{#set: common name=glycoside_hydrolase}}
+
{{#set: in pathway=PWY-2181}}
−
{{#set: common name=polyprotein}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: ec number=EC-3.2.1.108}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
{{#set: ec number=EC-3.2.1.23}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: gene associated=Tiso_gene_17558|Tiso_gene_12839|Tiso_gene_1398}}
+
−
{{#set: in pathway=BGALACT-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:44, 21 March 2018

Reaction RXN-1121

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2181, free phenylpropanoid acid biosynthesis: PWY-2181
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12200&oldid=35941"