Difference between revisions of "RXN0-5226"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-144 RXN1F-144] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2.5...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-144 RXN1F-144] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
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** REVERSIBLE
−
* common name:
+
−
** hydroxymethylbilane_synthase
+
−
** uroporphyrinogen_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
+
** [http://enzyme.expasy.org/EC/2.5.1.99 EC-2.5.1.99]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 4 [[PORPHOBILINOGEN]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
+
** 2 [[GERANYLGERANYL-PP]][c] '''<=>''' 1 [[PHYTOENE]][c] '''+''' 2 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 4 porphobilinogen[c] '''=>''' 4 ammonium[c] '''+''' 1 preuroporphyrinogen[c]
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** 2 geranylgeranyl diphosphate[c] '''<=>''' 1 all-trans-phytoene[c] '''+''' 2 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11630]]
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* Gene: [[Tiso_gene_15914]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_14709]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32454 32454]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
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** [http://www.genome.jp/dbget-bin/www_bget?R07916 R07916]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
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** [http://www.uniprot.org/uniprot/Q57989 Q57989]
+
{{#set: ec number=EC-2.5.1.99}}
−
** [http://www.uniprot.org/uniprot/O29026 O29026]
+
{{#set: gene associated=Tiso_gene_15914}}
−
** [http://www.uniprot.org/uniprot/P64336 P64336]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P28464 P28464]
+
−
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
+
−
** [http://www.uniprot.org/uniprot/P56140 P56140]
+
−
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
+
−
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
+
−
** [http://www.uniprot.org/uniprot/O26960 O26960]
+
−
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
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−
** [http://www.uniprot.org/uniprot/P06983 P06983]
+
−
** [http://www.uniprot.org/uniprot/P13446 P13446]
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−
** [http://www.uniprot.org/uniprot/P08397 P08397]
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−
** [http://www.uniprot.org/uniprot/P22907 P22907]
+
−
** [http://www.uniprot.org/uniprot/P19356 P19356]
+
−
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
+
−
** [http://www.uniprot.org/uniprot/P40129 P40129]
+
−
** [http://www.uniprot.org/uniprot/P30527 P30527]
+
−
** [http://www.uniprot.org/uniprot/P28789 P28789]
+
−
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
+
−
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
+
−
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
+
−
** [http://www.uniprot.org/uniprot/P73660 P73660]
+
−
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
+
−
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
+
−
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=hydroxymethylbilane_synthase}}
+
−
{{#set: common name=uroporphyrinogen_synthase}}
+
−
{{#set: ec number=EC-2.5.1.61}}
+
−
{{#set: gene associated=Tiso_gene_11630|Tiso_gene_14709}}
+
−
{{#set: in pathway=PWY-5189|PWY-5188}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:44, 21 March 2018

Reaction RXN1F-144

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] <=> 1 all-trans-phytoene[c] + 2 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5226&oldid=35979"