Difference between revisions of "Tiso gene 16842"

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(Created page with "Category:Gene == Gene Tiso_gene_9739 == * left end position: ** 3701 * transcription direction: ** POSITIVE * right end position: ** 5342 * centisome position: ** 33.33934...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_9739 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
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* left end position:
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* direction:
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** 3701
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** GDP-mannose 4,6-dehydratase
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* right end position:
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* ec number:
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** 5342
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** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
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* centisome position:
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** 33.33934   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATCM]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
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* [[ATCMf]]
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* With common name(s):
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** [[pantograph]]-[[creinhardtii]]
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** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-α-D-rhamnose[c] '''+''' 1 H2O[c]
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* [[ATDCM]]
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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* [[ATDCMf]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_13093]]
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* [[RXN-11832]]
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** Source: [[orthology-athaliana]]
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** in-silico_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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* Gene: [[Tiso_gene_13092]]
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** experimental_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-12002]]
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== Pathways  ==
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** in-silico_annotation
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* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
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***ec-number
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** experimental_annotation
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
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***ec-number
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
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* [[RXN-7913]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
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***ec-number
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** experimental_annotation
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* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
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***ec-number
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[UMPKf]]
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* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
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** [[pantograph]]-[[creinhardtii]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Pathways associated ==
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== Reconstruction information  ==
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* [[PWY-7205]]
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* Category: [[orthology]]
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* [[PWY-7197]]
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** Source: [[orthology-athaliana]]
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* [[PWY-7176]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3701}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
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{{#set: right end position=5342}}
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* LIGAND-RXN:
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{{#set: centisome position=33.33934    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
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{{#set: reaction associated=ATCM|ATCMf|ATDCM|ATDCMf|RXN-11832|RXN-12002|RXN-7913|UMPKf}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7205|PWY-7197|PWY-7176}}
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** [http://www.uniprot.org/uniprot/Q84439 Q84439]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=GDP-mannose 4,6-dehydratase}}
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{{#set: ec number=EC-4.2.1.47}}
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{{#set: gene associated=Tiso_gene_13093|Tiso_gene_13092}}
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{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:45, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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