Difference between revisions of "Tiso gene 5911"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_2991 == * left end position: ** 723 * transcription direction: ** POSITIVE * right end position: ** 1629 * centisome position: ** 4.070717...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** prephytoene-diphosphate...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_2991 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
−
* left end position:
+
* direction:
−
** 723
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
−
** POSITIVE
+
−
* right end position:
+
−
** 1629
+
−
* centisome position:
+
−
** 4.070717   
+
 
* Synonym(s):
 
* Synonym(s):
 +
** prephytoene-diphosphate synthase
 +
** PSase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[CPD-464]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12321]][c]
−
***ec-number
+
* With common name(s):
−
** [[pantograph]]-[[esiliculosus]]
+
** 1 prephytoene diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 15-cis-phytoene[c]
−
== Pathways associated ==
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_15914]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=723}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
−
{{#set: right end position=1629}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: centisome position=4.070717    }}
+
{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
−
{{#set: reaction associated=DNA-DIRECTED-RNA-POLYMERASE-RXN}}
+
{{#set: gene associated=Tiso_gene_15914}}
 +
{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 15:46, 21 March 2018

Reaction RXNARA-8002

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • prephytoene-diphosphate synthase
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prephytoene diphosphate[c] => 1 diphosphate[c] + 1 15-cis-phytoene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5942, trans-lycopene biosynthesis I (bacteria): PWY-5942
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5911&oldid=36192"