Difference between revisions of "COUMARATE"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=COUMARATE COUMARATE] == * smiles: ** C(=O)([O-])C=CC1(=CC=C(O)C=C1) * inchi key: ** InChIKey=NG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE-AMINOTRANSFERASE-RXN CYSTEINE-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBLE * common...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=COUMARATE COUMARATE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE-AMINOTRANSFERASE-RXN CYSTEINE-AMINOTRANSFERASE-RXN] ==
−
* smiles:
+
* direction:
−
** C(=O)([O-])C=CC1(=CC=C(O)C=C1)
+
** REVERSIBLE
−
* inchi key:
+
−
** InChIKey=NGSWKAQJJWESNS-ZZXKWVIFSA-M
+
 
* common name:
 
* common name:
−
** 4-coumarate
+
** cysteine transaminase
−
* molecular weight:
+
* ec number:
−
** 163.152   
+
** [http://enzyme.expasy.org/EC/2.6.1.3 EC-2.6.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** 4-hydroxycinnamate
 
−
** 4-hydroxycinnamic acid
 
−
** p-coumarate
 
−
** trans-4-hydroxycinnamate
 
−
** p-coumaric acid
 
−
** trans-p-hydroxycinnamate
 
−
** trans-4-coumarate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[4-COUMARATE--COA-LIGASE-RXN]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[CYS]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[3-MERCAPTO-PYRUVATE]][c]
−
* [[TRANS-CINNAMATE-4-MONOOXYGENASE-RXN]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 L-cysteine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-mercaptopyruvate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_6815]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_17718]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[PWY-5329]], L-cysteine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5329 PWY-5329]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1534]], hydrogen sulfide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1534 PWY0-1534]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 7400-08-0
+
* RHEA:
−
* PUBCHEM:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17441 17441]
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=54708745 54708745]
+
* LIGAND-RXN:
−
* HMDB : HMDB02035
+
** [http://www.genome.jp/dbget-bin/www_bget?R00895 R00895]
−
* LIGAND-CPD:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00811 C00811]
+
{{#set: common name=cysteine transaminase}}
−
* CHEMSPIDER:
+
{{#set: ec number=EC-2.6.1.3}}
−
** [http://www.chemspider.com/Chemical-Structure.4450678.html 4450678]
+
{{#set: gene associated=Tiso_gene_6815|Tiso_gene_17718}}
−
* CHEBI:
+
{{#set: in pathway=PWY-5329|PWY0-1534}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=12876 12876]
+
{{#set: reconstruction category=orthology|annotation}}
−
* METABOLIGHTS : MTBLC12876
+
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-experimental_annotation}}
−
{{#set: smiles=C(=O)([O-])C=CC1(=CC=C(O)C=C1)}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: inchi key=InChIKey=NGSWKAQJJWESNS-ZZXKWVIFSA-M}}
+
−
{{#set: common name=4-coumarate}}
+
−
{{#set: molecular weight=163.152    }}
+
−
{{#set: common name=4-hydroxycinnamate|4-hydroxycinnamic acid|p-coumarate|trans-4-hydroxycinnamate|p-coumaric acid|trans-p-hydroxycinnamate|trans-4-coumarate}}
+
−
{{#set: consumed by=4-COUMARATE--COA-LIGASE-RXN}}
+
−
{{#set: produced by=TRANS-CINNAMATE-4-MONOOXYGENASE-RXN}}
+

Revision as of 16:47, 21 March 2018

Reaction CYSTEINE-AMINOTRANSFERASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • cysteine transaminase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5329, L-cysteine degradation III: PWY-5329
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-1534, hydrogen sulfide biosynthesis I: PWY0-1534
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=COUMARATE&oldid=36299"