Difference between revisions of "RXN-1641"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=COBALADENOSYLTRANS-RXN COBALADENOSYLTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** c...")
(Created page with "Category:Gene == Gene Tiso_gene_2449 == * right end position: ** 7497 * transcription direction: ** POSITIVE * left end position: ** 6879 * centisome position: ** 35.44962...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=COBALADENOSYLTRANS-RXN COBALADENOSYLTRANS-RXN] ==
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== Gene Tiso_gene_2449 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7497
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* common name:
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* transcription direction:
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** cob_alaminadenosyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.5.1.17 EC-2.5.1.17]
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** 6879
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* centisome position:
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** 35.449627   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[COB-I-ALAMIN]][c] '''=>''' 1 [[P3I]][c] '''+''' 1 [[ADENOSYLCOBALAMIN]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 cob(I)alamin[c] '''=>''' 1 PPPi[c] '''+''' 1 adenosylcobalamin[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_6190]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-12196]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-6268]], adenosylcobalamin salvage from cobalamin: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6268 PWY-6268]
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* Reaction: [[RXN0-5462]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7497}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28671 28671]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6879}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01492 R01492]
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{{#set: centisome position=35.449627    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P0A9H5 P0A9H5]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/O30785 O30785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cob_alaminadenosyltransferase}}
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{{#set: ec number=EC-2.5.1.17}}
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{{#set: gene associated=Tiso_gene_6190}}
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{{#set: in pathway=PWY-6268}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:48, 21 March 2018

Gene Tiso_gene_2449

  • right end position:
    • 7497
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6879
  • centisome position:
    • 35.449627
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1641&oldid=36373"