Difference between revisions of "Wound-RNA"

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(Created page with "Category:Gene == Gene Tiso_gene_4284 == * left end position: ** 53 * transcription direction: ** NEGATIVE * right end position: ** 2586 * centisome position: ** 0.3513657...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7248 RXN0-7248] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4284 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7248 RXN0-7248] ==
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* left end position:
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* direction:
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** 53
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** polyketide_synthase
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* right end position:
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** long_chain_acyl-_synthetase
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** 2586
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** acyl-_synthetase
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* centisome position:
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** ORF
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** 0.3513657   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-12587]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][e] '''+''' 1 [[CPD-9245]][e] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-10269]][c] '''+''' 1 [[AMP]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 H+[e] '''+''' 1 palmitoleate[e] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 palmitoleoyl-CoA[c] '''+''' 1 AMP[c]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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* [[RXN-12588]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_4191]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN-14382]]
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* Gene: [[Tiso_gene_13394]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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* Gene: [[Tiso_gene_136]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN-14384]]
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* Gene: [[Tiso_gene_348]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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** Source: [[annotation-experimental_annotation]]
−
***ec-number
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_9394]]
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* [[RXN-14385]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
−
***ec-number
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* Gene: [[Tiso_gene_135]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-14386]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_10876]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_7855]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-15881]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_500]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
−
** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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== Pathways ==
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** [[pantograph]]-[[esiliculosus]]
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== Reconstruction information  ==
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* [[RXN-9787]]
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* Category: [[annotation]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** experimental_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN0-308]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
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−
== Pathways associated ==
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−
* [[PWY0-1021]]
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−
* [[PWY-6823]]
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* [[PWY-7250]]
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* [[PWY-6892]]
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* [[PWY-6891]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=53}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: right end position=2586}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: centisome position=0.3513657    }}
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{{#set: common name=acyl-_synthetase}}
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{{#set: reaction associated=RXN-12587|RXN-12588|RXN-14382|RXN-14384|RXN-14385|RXN-14386|RXN-15881|RXN-9787|RXN0-308}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY0-1021|PWY-6823|PWY-7250|PWY-6892|PWY-6891}}
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{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_4191|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_348|Tiso_gene_9394|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_7855|Tiso_gene_500}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:49, 21 March 2018

Reaction RXN0-7248

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[e] + 1 palmitoleate[e] + 1 ATP[c] + 1 coenzyme A[c] => 1 H+[c] + 1 diphosphate[c] + 1 palmitoleoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Wound-RNA&oldid=36595"