Difference between revisions of "1.8.1.4-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14917 RXN-14917] == * direction: ** LEFT-TO-RIGHT * common name: ** mpbq_msbq_methyltransferase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14917 RXN-14917] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** mpbq_msbq_methyltransferase
+
** Adenylate kinase (Fragment) n
 +
** ORF
 +
** adenylate_kinase
 +
** adenylate_kinase_4
 +
** central_pair_complex_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.295 EC-2.1.1.295]
+
** [http://enzyme.expasy.org/EC/2.7.4.3 EC-2.7.4.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CPD-11712]][c] '''=>''' 1 [[CPD-15834]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 2-methyl-6-geranylgeranyl-1,4-benzoquinol[c] '''=>''' 1 2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c]
+
** 1 AMP[c] '''+''' 1 ATP[c] '''=>''' 2 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2596]]
+
* Gene: [[Tiso_gene_4816]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_5837]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_694]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_805]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14116]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19036]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_5388]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13477]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5081]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5839]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_19734]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1453]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3353]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12257]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_12256]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_5387]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_8576]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7436]], vitamin E biosynthesis (tocotrienols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7436 PWY-7436]
+
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P05081 P05081]
 +
** [http://www.uniprot.org/uniprot/P20425 P20425]
 +
** [http://www.uniprot.org/uniprot/P08166 P08166]
 +
** [http://www.uniprot.org/uniprot/P38372 P38372]
 +
** [http://www.uniprot.org/uniprot/O27699 O27699]
 +
** [http://www.uniprot.org/uniprot/O29581 O29581]
 +
** [http://www.uniprot.org/uniprot/O59443 O59443]
 +
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
 +
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
 +
** [http://www.uniprot.org/uniprot/P58117 P58117]
 +
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
 +
** [http://www.uniprot.org/uniprot/P54819 P54819]
 +
** [http://www.uniprot.org/uniprot/O66490 O66490]
 +
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
 +
** [http://www.uniprot.org/uniprot/P49973 P49973]
 +
** [http://www.uniprot.org/uniprot/P24323 P24323]
 +
** [http://www.uniprot.org/uniprot/P47417 P47417]
 +
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
 +
** [http://www.uniprot.org/uniprot/P29410 P29410]
 +
** [http://www.uniprot.org/uniprot/P16304 P16304]
 +
** [http://www.uniprot.org/uniprot/P00570 P00570]
 +
** [http://www.uniprot.org/uniprot/P27142 P27142]
 +
** [http://www.uniprot.org/uniprot/P07170 P07170]
 +
** [http://www.uniprot.org/uniprot/P12115 P12115]
 +
** [http://www.uniprot.org/uniprot/P69441 P69441]
 +
** [http://www.uniprot.org/uniprot/P00568 P00568]
 +
** [http://www.uniprot.org/uniprot/P10772 P10772]
 +
** [http://www.uniprot.org/uniprot/P00571 P00571]
 +
** [http://www.uniprot.org/uniprot/P00569 P00569]
 +
** [http://www.uniprot.org/uniprot/P10251 P10251]
 +
** [http://www.uniprot.org/uniprot/P43417 P43417]
 +
** [http://www.uniprot.org/uniprot/P49974 P49974]
 +
** [http://www.uniprot.org/uniprot/P33107 P33107]
 +
** [http://www.uniprot.org/uniprot/P27143 P27143]
 +
** [http://www.uniprot.org/uniprot/P26364 P26364]
 +
** [http://www.uniprot.org/uniprot/P33075 P33075]
 +
** [http://www.uniprot.org/uniprot/P35140 P35140]
 +
** [http://www.uniprot.org/uniprot/P35141 P35141]
 +
** [http://www.uniprot.org/uniprot/P39068 P39068]
 +
** [http://www.uniprot.org/uniprot/P34346 P34346]
 +
** [http://www.uniprot.org/uniprot/P43188 P43188]
 +
** [http://www.uniprot.org/uniprot/P69344 P69344]
 +
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
 +
** [http://www.uniprot.org/uniprot/P49979 P49979]
 +
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
 +
** [http://www.uniprot.org/uniprot/P43412 P43412]
 +
** [http://www.uniprot.org/uniprot/P72641 P72641]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=mpbq_msbq_methyltransferase}}
+
{{#set: common name=Adenylate kinase (Fragment) n}}
−
{{#set: ec number=EC-2.1.1.295}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_2596}}
+
{{#set: common name=adenylate_kinase}}
−
{{#set: in pathway=PWY-7436}}
+
{{#set: common name=adenylate_kinase_4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=central_pair_complex_1}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: ec number=EC-2.7.4.3}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: gene associated=Tiso_gene_4816|Tiso_gene_5837|Tiso_gene_694|Tiso_gene_805|Tiso_gene_14116|Tiso_gene_19036|Tiso_gene_5388|Tiso_gene_13477|Tiso_gene_5081|Tiso_gene_5839|Tiso_gene_19734|Tiso_gene_1453|Tiso_gene_3353|Tiso_gene_12257|Tiso_gene_12256|Tiso_gene_5387|Tiso_gene_8576}}
 +
{{#set: in pathway=PWY-7219}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:53, 21 March 2018

Reaction ADENYL-KIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Adenylate kinase (Fragment) n
    • ORF
    • adenylate_kinase
    • adenylate_kinase_4
    • central_pair_complex_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 AMP[c] + 1 ATP[c] => 2 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7219, adenosine ribonucleotides de novo biosynthesis: PWY-7219
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=1.8.1.4-RXN&oldid=37047"