Difference between revisions of "Pi"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12932 CPD-12932] == * smiles: ** CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phospho...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12932 CPD-12932] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=OCMSUPSDVXKDFY-FQMRBFJQSA-N
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* common name:
 
* common name:
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** all-trans-3,4-didehydrolycopene
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** phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
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* molecular weight:
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* ec number:
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** 534.867   
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** [http://enzyme.expasy.org/EC/5.3.1.16 EC-5.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
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** 3,4-dehydrolycopene
 
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** 3,4-didehydrolycopene
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-11999]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c] '''=>''' 1 phosphoribulosylformimino-AICAR-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_1565]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_11199]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=16061227 16061227]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15469 15469]
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* CHEMSPIDER:
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* LIGAND-RXN:
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** [http://www.chemspider.com/Chemical-Structure.17220904.html 17220904]
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** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62474 62474]
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** [http://www.uniprot.org/uniprot/Q02131 Q02131]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
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** [http://www.genome.jp/dbget-bin/www_bget?C15867 C15867]
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** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
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{{#set: smiles=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C}}
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** [http://www.uniprot.org/uniprot/P44435 P44435]
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{{#set: inchi key=InChIKey=OCMSUPSDVXKDFY-FQMRBFJQSA-N}}
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** [http://www.uniprot.org/uniprot/P10372 P10372]
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{{#set: common name=all-trans-3,4-didehydrolycopene}}
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** [http://www.uniprot.org/uniprot/P10371 P10371]
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{{#set: molecular weight=534.867    }}
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** [http://www.uniprot.org/uniprot/P16250 P16250]
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{{#set: common name=3,4-dehydrolycopene|3,4-didehydrolycopene}}
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** [http://www.uniprot.org/uniprot/P05324 P05324]
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{{#set: consumed by=RXN-11999}}
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** [http://www.uniprot.org/uniprot/P26720 P26720]
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** [http://www.uniprot.org/uniprot/P50936 P50936]
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** [http://www.uniprot.org/uniprot/P74561 P74561]
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** [http://www.uniprot.org/uniprot/O82782 O82782]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase}}
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{{#set: ec number=EC-5.3.1.16}}
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{{#set: gene associated=Tiso_gene_1565|Tiso_gene_11199}}
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{{#set: in pathway=HISTSYN-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:55, 21 March 2018

Reaction PRIBFAICARPISOM-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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