Difference between revisions of "CPD-397"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETA-D-FRUCTOSE BETA-D-FRUCTOSE] == * smiles: ** C(O)C1(OC(O)(CO)C(C1O)O) * inchi key: ** InChI...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutas...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETA-D-FRUCTOSE BETA-D-FRUCTOSE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] ==
−
* smiles:
+
* direction:
−
** C(O)C1(OC(O)(CO)C(C1O)O)
+
** REVERSIBLE
−
* inchi key:
+
−
** InChIKey=RFSUNEUAIZKAJO-ARQDHWQXSA-N
+
 
* common name:
 
* common name:
−
** β-D-fructofuranose
+
** phosphoglycerate_mutase
−
* molecular weight:
+
** bisphosphoglycerate-dependent_phosphoglycerate_mutase
−
** 180.157   
+
** ORF
 +
** plastid_phosphoglycerate_mutase_protein
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12]
 
* Synonym(s):
 
* Synonym(s):
−
** β-D-fructofuranose
 
−
** β-D-fructose
 
−
** β-fruit sugar
 
−
** β-Levulose
 
−
** β-D-arabino-Hexulose
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[FRUCTOKINASE-RXN]]
+
* With identifiers:
−
* [[KETOHEXOKINASE-RXN]]
+
** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
−
== Reaction(s) known to produce the compound ==
+
* With common name(s):
−
* [[3.2.1.48-RXN]]
+
** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c]
−
* [[RXN-9985]]
+
 
−
* [[RFH]]
+
== Genes associated with this reaction  ==
−
* [[RXN-14515]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[BFFS]]
+
* Gene: [[Tiso_gene_15048]]
−
== Reaction(s) of unknown directionality ==
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_7201]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9922]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2841]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14530]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16754]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_2365]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16271]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_5468]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_20311]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_14664]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15391]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_14212]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_10516]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_9923]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2667]]
 +
** Source: [[orthology-synechocystis]]
 +
== Pathways  ==
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=439709 439709]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
−
* HMDB : HMDB00660
+
* LIGAND-RXN:
−
* LIGAND-CPD:
+
** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
−
** [http://www.genome.jp/dbget-bin/www_bget?C02336 C02336]
+
* UNIPROT:
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P30792 P30792]
−
** [http://www.chemspider.com/Chemical-Structure.388775.html 388775]
+
** [http://www.uniprot.org/uniprot/P52832 P52832]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P44865 P44865]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=28645 28645]
+
** [http://www.uniprot.org/uniprot/P30798 P30798]
−
* METABOLIGHTS : MTBLC28645
+
** [http://www.uniprot.org/uniprot/P62707 P62707]
−
{{#set: smiles=C(O)C1(OC(O)(CO)C(C1O)O)}}
+
** [http://www.uniprot.org/uniprot/P39773 P39773]
−
{{#set: inchi key=InChIKey=RFSUNEUAIZKAJO-ARQDHWQXSA-N}}
+
** [http://www.uniprot.org/uniprot/P47669 P47669]
−
{{#set: common name=&beta;-D-fructofuranose}}
+
** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
−
{{#set: molecular weight=180.157    }}
+
** [http://www.uniprot.org/uniprot/P56196 P56196]
−
{{#set: common name=&beta;-D-fructofuranose|&beta;-D-fructose|&beta;-fruit sugar|&beta;-Levulose|&beta;-D-arabino-Hexulose}}
+
** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
−
{{#set: consumed by=FRUCTOKINASE-RXN|KETOHEXOKINASE-RXN}}
+
** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
−
{{#set: produced by=3.2.1.48-RXN|RXN-9985|RFH|RXN-14515|BFFS}}
+
** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
 +
** [http://www.uniprot.org/uniprot/P00950 P00950]
 +
** [http://www.uniprot.org/uniprot/P18669 P18669]
 +
** [http://www.uniprot.org/uniprot/P15259 P15259]
 +
** [http://www.uniprot.org/uniprot/P16290 P16290]
 +
** [http://www.uniprot.org/uniprot/P35167 P35167]
 +
** [http://www.uniprot.org/uniprot/P33158 P33158]
 +
** [http://www.uniprot.org/uniprot/Q06464 Q06464]
 +
** [http://www.uniprot.org/uniprot/P36623 P36623]
 +
** [http://www.uniprot.org/uniprot/P35494 P35494]
 +
** [http://www.uniprot.org/uniprot/P37689 P37689]
 +
** [http://www.uniprot.org/uniprot/P35493 P35493]
 +
** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
 +
** [http://www.uniprot.org/uniprot/Q42908 Q42908]
 +
** [http://www.uniprot.org/uniprot/Q12326 Q12326]
 +
** [http://www.uniprot.org/uniprot/P53531 P53531]
 +
** [http://www.uniprot.org/uniprot/P51379 P51379]
 +
** [http://www.uniprot.org/uniprot/P75167 P75167]
 +
** [http://www.uniprot.org/uniprot/P72649 P72649]
 +
** [http://www.uniprot.org/uniprot/P74507 P74507]
 +
** [http://www.uniprot.org/uniprot/Q49006 Q49006]
 +
** [http://www.uniprot.org/uniprot/O24246 O24246]
 +
** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=phosphoglycerate_mutase}}
 +
{{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
 +
{{#set: ec number=EC-5.4.2.12}}
 +
{{#set: gene associated=Tiso_gene_15048|Tiso_gene_7201|Tiso_gene_9922|Tiso_gene_2841|Tiso_gene_14530|Tiso_gene_16754|Tiso_gene_2365|Tiso_gene_16271|Tiso_gene_5468|Tiso_gene_20311|Tiso_gene_14664|Tiso_gene_15391|Tiso_gene_14212|Tiso_gene_10516|Tiso_gene_9923|Tiso_gene_2667}}
 +
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:56, 21 March 2018

Reaction 3PGAREARR-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • phosphoglycerate_mutase
    • bisphosphoglycerate-dependent_phosphoglycerate_mutase
    • ORF
    • plastid_phosphoglycerate_mutase_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-phospho-D-glycerate[c] <=> 1 3-phospho-D-glycerate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
    • 5 reactions found over 9 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 8 reactions found over 12 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 10 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-397&oldid=37496"