Difference between revisions of "RXN-14883"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** REVERSIBLE
 
* common name:
 
* common name:
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** formaldehyde oxidation I
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** spermidine_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[6PGLUCONOLACT-RXN]]
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** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[PUTRESCINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
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** 5 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_8585]]
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** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 putrescine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
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*** [[Tiso_gene_10799]]
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*** [[Tiso_gene_20412]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_15950]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_5901]]
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* Gene: [[Tiso_gene_17803]]
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** 6 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_16717]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[GLU6PDEHYDROG-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_16718]]
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*** [[Tiso_gene_16918]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14877]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 4 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_17081]]
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*** [[manual-primary_network]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-synechocystis]]
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* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PGLUCISOM-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_19480]]
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** Source: [[orthology-athaliana]]
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** 3 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3341 RXN-3341]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=formaldehyde oxidation I}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
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{{#set: reaction found=3}}
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* LIGAND-RXN:
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{{#set: total reaction=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
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{{#set: completion rate=50.0}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P19623 P19623]
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** [http://www.uniprot.org/uniprot/Q57761 Q57761]
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** [http://www.uniprot.org/uniprot/Q12074 Q12074]
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** [http://www.uniprot.org/uniprot/Q12455 Q12455]
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** [http://www.uniprot.org/uniprot/P09158 P09158]
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** [http://www.uniprot.org/uniprot/O48660 O48660]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=spermidine_synthase}}
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{{#set: ec number=EC-2.5.1.16}}
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{{#set: gene associated=Tiso_gene_17803|Tiso_gene_16717|Tiso_gene_16718|Tiso_gene_17081}}
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{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:59, 21 March 2018

Reaction SPERMIDINESYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • spermidine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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