Difference between revisions of "Tiso gene 14428"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.24.64-RXN 3.4.24.64-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** mitochondrial_proce...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11213 RXN-11213] == * direction: ** LEFT-TO-RIGHT * common name: ** methylmalonate-semialdehyde...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.24.64-RXN 3.4.24.64-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11213 RXN-11213] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** mitochondrial_processing_peptidase
+
** methylmalonate-semialdehyde_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.24.64 EC-3.4.24.64]
+
** [http://enzyme.expasy.org/EC/1.2.1.27 EC-1.2.1.27]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Mitochondrial-Preproteins]][c] '''=>''' 1 [[Peptides-holder]][c] '''+''' 1 [[Processed-Mitochondrial-Proteins]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CH3-MALONATE-S-ALD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROPIONYL-COA]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a mitochondrial preprotein including a mitochondrial targeting sequence[c] '''=>''' 1 a peptide[c] '''+''' 1 a processed mitochondrial protein[c]
+
** 1 coenzyme A[c] '''+''' 1 NAD+[c] '''+''' 1 (S)-methylmalonate-semialdehyde[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 1 propanoyl-CoA[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5405]]
+
* Gene: [[Tiso_gene_11323]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P11913 P11913]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20804 20804]
−
** [http://www.uniprot.org/uniprot/P20069 P20069]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P23955 P23955]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00935 R00935]
−
** [http://www.uniprot.org/uniprot/Q9T2S9 Q9T2S9]
+
−
** [http://www.uniprot.org/uniprot/Q9T2S8 Q9T2S8]
+
−
** [http://www.uniprot.org/uniprot/P10507 P10507]
+
−
** [http://www.uniprot.org/uniprot/P29677 P29677]
+
−
** [http://www.uniprot.org/uniprot/Q03346 Q03346]
+
−
** [http://www.uniprot.org/uniprot/Q41440 Q41440]
+
−
** [http://www.uniprot.org/uniprot/Q9UG64 Q9UG64]
+
−
** [http://www.uniprot.org/uniprot/Q9P7X1 Q9P7X1]
+
−
** [http://www.uniprot.org/uniprot/P11914 P11914]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=mitochondrial_processing_peptidase}}
+
{{#set: common name=methylmalonate-semialdehyde_dehydrogenase}}
−
{{#set: ec number=EC-3.4.24.64}}
+
{{#set: ec number=EC-1.2.1.27}}
−
{{#set: gene associated=Tiso_gene_5405}}
+
{{#set: gene associated=Tiso_gene_11323}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=VALDEG-PWY}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:59, 21 March 2018

Reaction RXN-11213

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methylmalonate-semialdehyde_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 NAD+[c] + 1 (S)-methylmalonate-semialdehyde[c] + 1 H2O[c] => 1 NADH[c] + 1 propanoyl-CoA[c] + 1 hydrogencarbonate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • VALDEG-PWY, L-valine degradation I: VALDEG-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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