Difference between revisions of "CPD-5162"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_4976 == * left end position: ** 8336 * transcription direction: ** NEGATIVE * right end position: ** 14013 * centisome position: ** 59.1835...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9633 RXN-9633] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-stearoyl-[acyl-carrier...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_4976 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9633 RXN-9633] ==
−
* left end position:
+
* direction:
−
** 8336
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** 3-oxo-stearoyl-[acyl-carrier protein] reductase
−
* right end position:
+
** polyketide_synthase
−
** 14013
+
** 3-oxoacyl-(acyl-carrier-protein)
−
* centisome position:
+
* ec number:
−
** 59.183525   
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[6.3.4.16-RXN]]
+
* With identifiers:
−
** [[pantograph]]-[[esiliculosus]]
+
** 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[R-3-hydroxystearoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
−
* [[CARBPSYN-RXN]]
+
* With common name(s):
−
** in-silico_annotation
+
** 1 a 3-oxo-stearoyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 a (3R)-3-hydroxystearoyl-[acp][c] '''+''' 1 NADP+[c]
−
***ec-number
+
 
−
* [[GLUTAMIN-RXN]]
+
== Genes associated with this reaction  ==
−
** in-silico_annotation
+
Genes have been associated with this reaction based on different elements listed below.
−
***ec-number
+
* Gene: [[Tiso_gene_10876]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-13202]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_9885]]
−
***ec-number
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN-14196]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_136]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-16909]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_135]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-16910]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_500]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
== Pathways associated ==
+
*** Assignment: EC-NUMBER
−
* [[PWY-4984]]
+
* Gene: [[Tiso_gene_13394]]
−
* [[GLUTAMINDEG-PWY]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[ARGSYN-PWY]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-5154]]
+
* Gene: [[Tiso_gene_13083]]
−
* [[PWY-7790]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[ARGSYNBSUB-PWY]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-7693]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[PWY-7400]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-7791]]
+
** Source: [[orthology-esiliculosus]]
−
* [[PWY-5686]]
+
== Pathways ==
−
* [[CITRULBIO-PWY]]
+
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=8336}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=NEGATIVE}}
+
{{#set: common name=3-oxo-stearoyl-[acyl-carrier protein] reductase}}
−
{{#set: right end position=14013}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: centisome position=59.183525    }}
+
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
−
{{#set: reaction associated=6.3.4.16-RXN|CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7693|PWY-7400|PWY-7791|PWY-5686|CITRULBIO-PWY}}
+
{{#set: ec number=EC-1.1.1.100}}
 +
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_9885|Tiso_gene_136|Tiso_gene_135|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_13083}}
 +
{{#set: in pathway=PWY-5989|PWY3O-355}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:00, 21 March 2018

Reaction RXN-9633

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-stearoyl-[acyl-carrier protein] reductase
    • polyketide_synthase
    • 3-oxoacyl-(acyl-carrier-protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway
  • PWY3O-355, stearate biosynthesis III (fungi): PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

"3-oxo-stearoyl-[acyl-carrier protein] reductase" cannot be used as a page name in this wiki.





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-5162&oldid=37972"