Difference between revisions of "Tiso gene 2955"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.59-RXN 4.2.1.59-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase *...")
(Created page with "Category:Gene == Gene Tiso_gene_14025 == * right end position: ** 1272 * transcription direction: ** POSITIVE * left end position: ** 245 * centisome position: ** 4.158180...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.59-RXN 4.2.1.59-RXN] ==
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== Gene Tiso_gene_14025 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1272
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 245
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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** 4.1581807   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
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** 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[2-Octenoyl-ACPs]][c]
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* With common name(s):
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** 1 a (3R)-3-hydroxyoctanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans oct-2-enoyl-[acp][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6884]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_6885]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=1272}}
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{{#set: common name=polyketide_synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: left end position=245}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: centisome position=4.1581807    }}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: reaction associated=DNA-DIRECTED-RNA-POLYMERASE-RXN}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_500|Tiso_gene_6884|Tiso_gene_6885|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_13394}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:00, 21 March 2018

Gene Tiso_gene_14025

  • right end position:
    • 1272
  • transcription direction:
    • POSITIVE
  • left end position:
    • 245
  • centisome position:
    • 4.1581807
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2955&oldid=38049"