Difference between revisions of "COUMARALDEHYDE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutas...")
(Created page with "Category:Gene == Gene Tiso_gene_5102 == * right end position: ** 2155 * transcription direction: ** POSITIVE * left end position: ** 428 * centisome position: ** 3.0769231...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] ==
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== Gene Tiso_gene_5102 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2155
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* common name:
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* transcription direction:
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** phosphoglycerate_mutase
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** POSITIVE
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** bisphosphoglycerate-dependent_phosphoglycerate_mutase
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* left end position:
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** ORF
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** 428
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** plastid_phosphoglycerate_mutase_protein
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* centisome position:
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* ec number:
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** 3.0769231   
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** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4.2.99.18-RXN]]
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** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
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* With common name(s):
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** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2667]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_9922]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15048]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_2841]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14530]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16754]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_2365]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16271]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_5468]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_20311]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14664]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15391]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_14212]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_10516]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_9923]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7201]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2155}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=428}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
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{{#set: centisome position=3.0769231    }}
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* UNIPROT:
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{{#set: reaction associated=4.2.99.18-RXN}}
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** [http://www.uniprot.org/uniprot/P30792 P30792]
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** [http://www.uniprot.org/uniprot/P52832 P52832]
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** [http://www.uniprot.org/uniprot/P44865 P44865]
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** [http://www.uniprot.org/uniprot/P30798 P30798]
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** [http://www.uniprot.org/uniprot/P62707 P62707]
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** [http://www.uniprot.org/uniprot/P39773 P39773]
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** [http://www.uniprot.org/uniprot/P47669 P47669]
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** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
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** [http://www.uniprot.org/uniprot/P56196 P56196]
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** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
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** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
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** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
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** [http://www.uniprot.org/uniprot/P00950 P00950]
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** [http://www.uniprot.org/uniprot/P18669 P18669]
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** [http://www.uniprot.org/uniprot/P15259 P15259]
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** [http://www.uniprot.org/uniprot/P16290 P16290]
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** [http://www.uniprot.org/uniprot/P35167 P35167]
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** [http://www.uniprot.org/uniprot/P33158 P33158]
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** [http://www.uniprot.org/uniprot/Q06464 Q06464]
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** [http://www.uniprot.org/uniprot/P36623 P36623]
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** [http://www.uniprot.org/uniprot/P35494 P35494]
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** [http://www.uniprot.org/uniprot/P37689 P37689]
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** [http://www.uniprot.org/uniprot/P35493 P35493]
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** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
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** [http://www.uniprot.org/uniprot/Q42908 Q42908]
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** [http://www.uniprot.org/uniprot/Q12326 Q12326]
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** [http://www.uniprot.org/uniprot/P53531 P53531]
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** [http://www.uniprot.org/uniprot/P51379 P51379]
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** [http://www.uniprot.org/uniprot/P75167 P75167]
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** [http://www.uniprot.org/uniprot/P72649 P72649]
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** [http://www.uniprot.org/uniprot/P74507 P74507]
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** [http://www.uniprot.org/uniprot/Q49006 Q49006]
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** [http://www.uniprot.org/uniprot/O24246 O24246]
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** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=phosphoglycerate_mutase}}
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{{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}}
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{{#set: common name=ORF}}
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{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
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{{#set: ec number=EC-5.4.2.12}}
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{{#set: gene associated=Tiso_gene_2667|Tiso_gene_9922|Tiso_gene_15048|Tiso_gene_2841|Tiso_gene_14530|Tiso_gene_16754|Tiso_gene_2365|Tiso_gene_16271|Tiso_gene_5468|Tiso_gene_20311|Tiso_gene_14664|Tiso_gene_15391|Tiso_gene_14212|Tiso_gene_10516|Tiso_gene_9923|Tiso_gene_7201}}
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{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:01, 21 March 2018

Gene Tiso_gene_5102

  • right end position:
    • 2155
  • transcription direction:
    • POSITIVE
  • left end position:
    • 428
  • centisome position:
    • 3.0769231
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=COUMARALDEHYDE&oldid=38082"