Difference between revisions of "2E-11Z-icosa-2-11-dienoyl-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2541 RXN-2541] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [http://enzy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2541 RXN-2541] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.115 EC-2.5.1.115]
+
** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHYTYL-PYROPHOSPHATE]][c] '''+''' 1 [[HOMOGENTISATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[MPBQ]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[CPD-9646]][c] '''+''' 1 [[C3]][c] '''<=>''' 1 [[C4]][c] '''+''' 1 [[UMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 phytyl diphosphate[c] '''+''' 1 homogentisate[c] '''+''' 1 H+[c] '''=>''' 1 diphosphate[c] '''+''' 1 2-methyl-6-phytyl-1,4-benzoquinol[c] '''+''' 1 CO2[c]
+
** 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 UDP-N-acetyl-&alpha;-D-muramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] '''<=>''' 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] '''+''' 1 UMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13582]]
+
* Gene: [[Tiso_gene_1604]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
+
* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21920 21920]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07500 R07500]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-2.5.1.115}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_13582}}
+
{{#set: ec number=EC-2.7.8.13}}
−
{{#set: in pathway=PWY-1422}}
+
{{#set: gene associated=Tiso_gene_1604}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6471|PWY-5265}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:03, 21 March 2018

Reaction RXN-8975

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 di-trans,octa-cis-undecaprenyl phosphate[c] + 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] <=> 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] + 1 UMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6471, peptidoglycan biosynthesis IV (Enterococcus faecium): PWY-6471
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-5265, peptidoglycan biosynthesis II (staphylococci): PWY-5265
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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